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| author | Bruno Bzeznik <Bruno.Bzeznik@imag.fr> | 2019-03-26 11:52:26 +0100 |
|---|---|---|
| committer | Bruno Bzeznik <Bruno.Bzeznik@imag.fr> | 2019-03-26 15:52:35 +0100 |
| commit | 00431493c011af62e2dc1f393e9327b148facd72 (patch) | |
| tree | f13202102ff3548a7669dc77e07c1d27d72e9ba6 /pkgs/applications/science | |
| parent | d73f16d6767e99675682f822dac3017bf9af1e83 (diff) | |
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itsx: init at 1.1.1
Diffstat (limited to 'pkgs/applications/science')
| -rw-r--r-- | pkgs/applications/science/biology/itsx/default.nix | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/itsx/default.nix b/pkgs/applications/science/biology/itsx/default.nix new file mode 100644 index 00000000000..804e71c1bfa --- /dev/null +++ b/pkgs/applications/science/biology/itsx/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchurl, hmmer, perl }: + +stdenv.mkDerivation rec { + version = "1.1.1"; + name = "itsx-${version}"; + + src = fetchurl { + url = "http://microbiology.se/sw/ITSx_${version}.tar.gz"; + sha256 = "0lrmy2n3ax7f208k0k8l3yz0j5cpz05hv4hx1nnxzn0c51z1pc31"; + }; + + buildInputs = [ hmmer perl ]; + + buildPhase = '' + sed -e "s,profileDB = .*,profileDB = \"$out/share/ITSx_db/HMMs\";," -i ITSx + sed "3 a \$ENV{\'PATH\'}='${hmmer}/bin:'.\"\$ENV{\'PATH\'}\";" -i ITSx + mkdir bin + mv ITSx bin + ''; + + installPhase = '' + mkdir -p $out/share/doc && cp -a bin $out/ + cp *pdf $out/share/doc + cp -r ITSx_db $out/share + ''; + + meta = with stdenv.lib; { + description = "Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing"; + homepage = http://microbiology.se/software/itsx/; + license = licenses.gpl3; + maintainers = [ maintainers.bzizou ]; + platforms = [ "x86_64-linux" "i686-linux" ]; + }; +} |