diff options
| -rw-r--r-- | pkgs/applications/science/biology/itsx/default.nix | 34 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 36 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/itsx/default.nix b/pkgs/applications/science/biology/itsx/default.nix new file mode 100644 index 00000000000..804e71c1bfa --- /dev/null +++ b/pkgs/applications/science/biology/itsx/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchurl, hmmer, perl }: + +stdenv.mkDerivation rec { + version = "1.1.1"; + name = "itsx-${version}"; + + src = fetchurl { + url = "http://microbiology.se/sw/ITSx_${version}.tar.gz"; + sha256 = "0lrmy2n3ax7f208k0k8l3yz0j5cpz05hv4hx1nnxzn0c51z1pc31"; + }; + + buildInputs = [ hmmer perl ]; + + buildPhase = '' + sed -e "s,profileDB = .*,profileDB = \"$out/share/ITSx_db/HMMs\";," -i ITSx + sed "3 a \$ENV{\'PATH\'}='${hmmer}/bin:'.\"\$ENV{\'PATH\'}\";" -i ITSx + mkdir bin + mv ITSx bin + ''; + + installPhase = '' + mkdir -p $out/share/doc && cp -a bin $out/ + cp *pdf $out/share/doc + cp -r ITSx_db $out/share + ''; + + meta = with stdenv.lib; { + description = "Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing"; + homepage = http://microbiology.se/software/itsx/; + license = licenses.gpl3; + maintainers = [ maintainers.bzizou ]; + platforms = [ "x86_64-linux" "i686-linux" ]; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 33464ab30a4..fddb91de99d 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -21649,6 +21649,8 @@ in igv = callPackage ../applications/science/biology/igv { }; inormalize = callPackage ../applications/science/biology/inormalize { }; + + itsx = callPackage ../applications/science/biology/itsx { }; iv = callPackage ../applications/science/biology/iv { neuron-version = neuron.version; |