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{ lib
, python
, buildPythonPackage
, fetchFromGitHub
, cython
, tiledb
, numpy
, wheel
, isPy3k
, setuptools_scm
, psutil
}:
buildPythonPackage rec {
pname = "tiledb";
version = "0.5.2";
format = "setuptools";
src = fetchFromGitHub {
owner = "TileDB-Inc";
repo = "TileDB-Py";
rev = version;
sha256 = "0y7llvy943fviayjny8xybvn3sm1ikjvazqk172ls90lcpr8rlr1";
};
nativeBuildInputs = [
cython
setuptools_scm
];
buildInputs = [
tiledb
];
propagatedBuildInputs = [
numpy
wheel # No idea why but it is listed
];
checkInputs = [
psutil
];
TILEDB_PATH = tiledb;
SETUPTOOLS_SCM_PRETEND_VERSION = version;
disabled = !isPy3k; # Not bothering with python2 anymore
postPatch = ''
# Hardcode path to shared object
substituteInPlace tiledb/__init__.py --replace \
'os.path.join(lib_dir, lib_name)' 'os.path.join("${tiledb}/lib", lib_name)'
# Disable failing test
substituteInPlace tiledb/tests/test_examples.py --replace \
"test_docs" "dont_test_docs"
'';
checkPhase = ''
pushd "$out"
${python.interpreter} -m unittest tiledb.tests.all.suite_test
popd
'';
meta = with lib; {
description = "Python interface to the TileDB storage manager";
homepage = https://github.com/TileDB-Inc/TileDB-Py;
license = licenses.mit;
maintainers = with maintainers; [ fridh ];
};
}
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