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{ stdenv, fetchurl, python, buildPythonPackage
, cython, bzip2, lzo, numpy, numexpr, hdf5 }:
buildPythonPackage rec {
version = "3.1.1";
name = "tables-${version}";
src = fetchurl {
url = "mirror://sourceforge/pytables/${name}.tar.gz";
sha256 = "18rdzv9xwiapb5c8y47rk2fi3fdm2dpjf68wfycma67ifrih7f9r";
};
buildInputs = [ hdf5 cython bzip2 lzo ];
propagatedBuildInputs = [ numpy numexpr ];
# The setup script complains about missing run-paths, but they are
# actually set.
setupPyBuildFlags =
[ "--hdf5=${hdf5}"
"--lzo=${lzo}"
"--bzip2=${bzip2}"
];
setupPyInstallFlags = setupPyBuildFlags;
# Run the test suite.
# It requires the build path to be in the python search path.
# These tests take quite some time.
# If the hdf5 library is built with zlib then there is only one
# test-failure. That is the same failure as described in the following
# github issue:
# https://github.com/PyTables/PyTables/issues/269
checkPhase = ''
${python}/bin/${python.executable} <<EOF
import sysconfig
import sys
import os
f = "lib.{platform}-{version[0]}.{version[1]}"
lib = f.format(platform=sysconfig.get_platform(),
version=sys.version_info)
build = os.path.join(os.getcwd(), 'build', lib)
sys.path.insert(0, build)
import tables
r = tables.test()
if not r.wasSuccessful():
sys.exit(1)
EOF
'';
# Disable tests until the failure described above is fixed.
doCheck = false;
meta = {
description = "Hierarchical datasets for Python";
homepage = "http://www.pytables.org/";
license = stdenv.lib.licenses.bsd2;
};
}
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