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{ lib
, buildPythonPackage
, fetchFromGitHub
, pythonOlder
, pytestCheckHook
, cryptography
, nibabel
, numpy
, pydicom
, simpleitk
}:
buildPythonPackage rec {
pname = "pymedio";
version = "0.2.13";
disabled = pythonOlder "3.9";
src = fetchFromGitHub {
owner = "jcreinhold";
repo = "pymedio";
rev = "refs/tags/v${version}";
hash = "sha256-iHbClOrtYkHT1Nar+5j/ig4Krya8LdQdFB4Mmm5B9bg=";
};
# relax Python dep to work with 3.10.x and 3.11.x
postPatch = ''
substituteInPlace setup.cfg --replace "!=3.10.*," "" --replace "!=3.11.*" ""
'';
propagatedBuildInputs = [ numpy ];
nativeCheckInputs = [
pytestCheckHook
cryptography
nibabel
pydicom
simpleitk
];
pythonImportsCheck = [
"pymedio"
];
meta = with lib; {
description = "Read medical image files into Numpy arrays";
homepage = "https://github.com/jcreinhold/pymedio";
license = licenses.mit;
maintainers = with maintainers; [ bcdarwin ];
};
}
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