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{ lib
, aeppl
, aesara
, arviz
, buildPythonPackage
, cachetools
, cloudpickle
, fastprogress
, fetchFromGitHub
, numpy
, pythonOlder
, scipy
, typing-extensions
}:
buildPythonPackage rec {
pname = "pymc3";
version = "unstable-2022-05-23";
format = "setuptools";
disabled = pythonOlder "3.7";
src = fetchFromGitHub {
owner = "pymc-devs";
repo = "pymc3";
rev = "b5a5b569779673914c9420c1cc0135b118505ff5";
hash = "sha256-vkIFwdjX2Rex8oqscVMP4xh0K4bjmN/RL7aQmOI//Dw=";
};
propagatedBuildInputs = [
aeppl
aesara
arviz
cachetools
cloudpickle
fastprogress
numpy
scipy
typing-extensions
];
postPatch = ''
substituteInPlace setup.py \
--replace ', "pytest-cov"' ""
substituteInPlace requirements.txt \
--replace "aesara==2.6.2" "aesara" \
--replace "aeppl==0.0.28" "aeppl"
'';
# The test suite is computationally intensive and test failures are not
# indicative for package usability hence tests are disabled by default.
doCheck = false;
pythonImportsCheck = [
"pymc"
];
meta = with lib; {
description = "Bayesian estimation, particularly using Markov chain Monte Carlo (MCMC)";
homepage = "https://github.com/pymc-devs/pymc3";
license = licenses.asl20;
maintainers = with maintainers; [ nidabdella ];
};
}
|