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{ lib
, stdenv
, buildPythonPackage
, fetchFromGitHub
, pythonOlder
, pytestCheckHook
, numpy
, pillow
, setuptools
}:
let
pname = "pydicom";
version = "2.4.3";
src = fetchFromGitHub {
owner = "pydicom";
repo = "pydicom";
rev = "refs/tags/v${version}";
hash = "sha256-PF4iA/FPxPYD8OfgWqKRndwi2vURuzh6tlEwduxs/3E=";
};
# Pydicom needs pydicom-data to run some tests. If these files aren't downloaded
# before the package creation, it'll try to download during the checkPhase.
test_data = fetchFromGitHub {
owner = "pydicom";
repo = "pydicom-data";
rev = "cbb9b2148bccf0f550e3758c07aca3d0e328e768";
hash = "sha256-nF/j7pfcEpWHjjsqqTtIkW8hCEbuQ3J4IxpRk0qc1CQ=";
};
in
buildPythonPackage {
inherit pname version src;
disabled = pythonOlder "3.6";
format = "setuptools";
patches = [
# backport of https://github.com/pydicom/pydicom/commit/2513a20cc41743a42bdb86f4cbb4873899b7823c
./pillow-10.1.0-compat.patch
];
propagatedBuildInputs = [
numpy
pillow
setuptools
];
nativeCheckInputs = [
pytestCheckHook
];
# Setting $HOME to prevent pytest to try to create a folder inside
# /homeless-shelter which is read-only.
# Linking pydicom-data dicom files to $HOME/.pydicom/data
preCheck = ''
export HOME=$TMP/test-home
mkdir -p $HOME/.pydicom/
ln -s ${test_data}/data_store/data $HOME/.pydicom/data
'';
disabledTests = [
# tries to remove a dicom inside $HOME/.pydicom/data/ and download it again
"test_fetch_data_files"
] ++ lib.optionals stdenv.isAarch64 [
# https://github.com/pydicom/pydicom/issues/1386
"test_array"
] ++ lib.optionals stdenv.isDarwin [
# flaky, hard to reproduce failure outside hydra
"test_time_check"
];
pythonImportsCheck = [
"pydicom"
];
meta = with lib; {
description = "Python package for working with DICOM files";
homepage = "https://pydicom.github.io";
license = licenses.mit;
maintainers = with maintainers; [ bcdarwin ];
};
}
|