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{ stdenv
, lib
, buildPythonPackage
, fetchPypi
, deprecated
, hopcroftkarp
, joblib
, matplotlib
, numpy
, scikit-learn
, scipy
, pytestCheckHook
, pythonAtLeast
, pythonOlder
}:
buildPythonPackage rec {
pname = "persim";
version = "0.3.2";
format = "setuptools";
disabled = pythonOlder "3.7";
src = fetchPypi {
inherit pname version;
hash = "sha256-p6Vumfr+vRDr0D9PnEZItp9vNlCLIb59HpBg1KdyHGE=";
};
propagatedBuildInputs = [
deprecated
hopcroftkarp
joblib
matplotlib
numpy
scikit-learn
scipy
];
nativeCheckInputs = [
pytestCheckHook
];
preCheck = ''
# specifically needed for darwin
export HOME=$(mktemp -d)
mkdir -p $HOME/.matplotlib
echo "backend: ps" > $HOME/.matplotlib/matplotlibrc
'';
pythonImportsCheck = [
"persim"
];
disabledTests = lib.optionals (pythonAtLeast "3.10") [
# AttributeError: module 'collections' has no attribute 'Iterable'
"test_empyt_diagram_list"
"test_empty_diagram_list"
"test_fit_diagram"
"test_integer_diagrams"
"test_lists_of_lists"
"test_mixed_pairs"
"test_multiple_diagrams"
"test_n_pixels"
# https://github.com/scikit-tda/persim/issues/67
"test_persistenceimager"
# ValueError: setting an array element with a sequence
"test_exact_critical_pairs"
];
meta = with lib; {
description = "Distances and representations of persistence diagrams";
homepage = "https://persim.scikit-tda.org";
changelog = "https://github.com/scikit-tda/persim/releases/tag/v${version}";
license = licenses.mit;
maintainers = with maintainers; [ ];
broken = stdenv.isDarwin;
};
}
|