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{ lib
, buildPythonPackage
, fetchFromGitHub
, pythonOlder
, ninja
, ignite
, numpy
, pybind11
, torch
, which
}:
buildPythonPackage rec {
pname = "monai";
version = "1.3.0";
disabled = pythonOlder "3.8";
src = fetchFromGitHub {
owner = "Project-MONAI";
repo = "MONAI";
rev = "refs/tags/${version}";
hash = "sha256-h//igmSV1cPAFifE1woIluSyGwZBRByYMLqeY3oLHnk=";
};
# Ninja is not detected by setuptools for some reason even though it's present:
postPatch = ''
substituteInPlace "setup.cfg" --replace " ninja" ""
'';
preBuild = ''
export MAX_JOBS=$NIX_BUILD_CORES;
'';
nativeBuildInputs = [ ninja which ];
buildInputs = [ pybind11 ];
propagatedBuildInputs = [ numpy torch ignite ];
BUILD_MONAI = 1;
doCheck = false; # takes too long; tries to download data
pythonImportsCheck = [
"monai"
"monai.apps"
"monai.data"
"monai.engines"
"monai.handlers"
"monai.inferers"
"monai.losses"
"monai.metrics"
"monai.optimizers"
"monai.networks"
"monai.transforms"
"monai.utils"
"monai.visualize"
];
meta = with lib; {
description = "Pytorch framework (based on Ignite) for deep learning in medical imaging";
homepage = "https://github.com/Project-MONAI/MONAI";
changelog = "https://github.com/Project-MONAI/MONAI/releases/tag/${version}";
license = licenses.asl20;
maintainers = [ maintainers.bcdarwin ];
};
}
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