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{ lib
, buildPythonPackage
, fetchFromGitHub
, pythonOlder
, pytestCheckHook
, atpublic
, bidict
, black
, clickhouse-connect
, dask
, datafusion
, db-dtypes
, duckdb
, duckdb-engine
, filelock
, geoalchemy2
, geopandas
, google-cloud-bigquery
, google-cloud-bigquery-storage
, graphviz-nox
, hypothesis
, multipledispatch
, numpy
, oracledb
, packaging
, pandas
, parsy
, poetry-core
, poetry-dynamic-versioning
, polars
, pooch
, psycopg2
, pyarrow
, pydata-google-auth
, pydruid
, pymysql
, pyspark
, pytest-benchmark
, pytest-httpserver
, pytest-mock
, pytest-randomly
, pytest-snapshot
, pytest-xdist
, python-dateutil
, pytz
, regex
, rich
, shapely
, snowflake-connector-python
, snowflake-sqlalchemy
, sqlalchemy
, sqlalchemy-views
, sqlglot
, sqlite
, toolz
, trino-python-client
, typing-extensions
}:
let
testBackends = [ "datafusion" "duckdb" "pandas" "sqlite" ];
ibisTestingData = fetchFromGitHub {
name = "ibis-testing-data";
owner = "ibis-project";
repo = "testing-data";
rev = "2b3968deaa1a28791b2901dbbcc9bfd3d2f23e9b";
hash = "sha256-q1b5IcOl5oIFXP7/P5RufncjHEVrWp4NjoU2uo/BE9U=";
};
in
buildPythonPackage rec {
pname = "ibis-framework";
version = "6.1.0";
format = "pyproject";
disabled = pythonOlder "3.9";
src = fetchFromGitHub {
name = "ibis-source";
repo = "ibis";
owner = "ibis-project";
rev = "refs/tags/${version}";
hash = "sha256-+AtXgRNxPryP/fd/GQlLNxWbP6ozikqG2yBCp3dE0tY=";
};
nativeBuildInputs = [
poetry-core
poetry-dynamic-versioning
];
POETRY_DYNAMIC_VERSIONING_BYPASS = version;
propagatedBuildInputs = [
atpublic
bidict
filelock
multipledispatch
numpy
pandas
parsy
pooch
pyarrow
python-dateutil
pytz
rich
sqlglot
toolz
typing-extensions
]
++ pooch.optional-dependencies.progress
++ pooch.optional-dependencies.xxhash;
nativeCheckInputs = [
pytestCheckHook
hypothesis
pytest-benchmark
pytest-httpserver
pytest-mock
pytest-randomly
pytest-snapshot
pytest-xdist
] ++ lib.concatMap (name: passthru.optional-dependencies.${name}) testBackends;
pytestFlagsArray = [
"--dist=loadgroup"
"-m"
"'${lib.concatStringsSep " or " testBackends} or core'"
# breakage from sqlalchemy2 truediv changes
"--deselect=ibis/tests/sql/test_sqlalchemy.py::test_tpc_h17"
# tries to download duckdb extensions
"--deselect=ibis/backends/duckdb/tests/test_register.py::test_register_sqlite"
"--deselect=ibis/backends/duckdb/tests/test_register.py::test_read_sqlite"
# duckdb does not respect sample_size=2 (reads 3 lines of csv).
"--deselect=ibis/backends/tests/test_register.py::test_csv_reregister_schema"
# duckdb fails with:
# "This function can not be called with an active transaction!, commit or abort the existing one first"
"--deselect=ibis/backends/tests/test_udf.py::test_vectorized_udf"
"--deselect=ibis/backends/tests/test_udf.py::test_map_merge_udf"
"--deselect=ibis/backends/tests/test_udf.py::test_udf"
"--deselect=ibis/backends/tests/test_udf.py::test_map_udf"
# pyarrow13 is not supported yet.
"--deselect=ibis/backends/tests/test_temporal.py::test_date_truncate"
"--deselect=ibis/backends/tests/test_temporal.py::test_integer_to_interval_timestamp"
"--deselect=ibis/backends/tests/test_temporal.py::test_integer_to_interval_timestamp"
"--deselect=ibis/backends/tests/test_temporal.py::test_interval_add_cast_column"
"--deselect=ibis/backends/tests/test_temporal.py::test_integer_to_interval_timestamp"
"--deselect=ibis/backends/tests/test_temporal.py::test_integer_to_interval_timestamp"
"--deselect=ibis/backends/tests/test_temporal.py::test_integer_to_interval_timestamp"
"--deselect=ibis/backends/tests/test_temporal.py::test_integer_to_interval_timestamp"
"--deselect=ibis/backends/tests/test_timecontext.py::test_context_adjustment_filter_before_window"
"--deselect=ibis/backends/tests/test_timecontext.py::test_context_adjustment_window_udf"
"--deselect=ibis/backends/tests/test_timecontext.py::test_context_adjustment_window_udf"
"--deselect=ibis/backends/tests/test_aggregation.py::test_aggregate_grouped"
];
# patch out tests that check formatting with black
postPatch = ''
find ibis/tests -type f -name '*.py' -exec sed -i \
-e '/^ *assert_decompile_roundtrip/d' \
-e 's/^\( *\)code = ibis.decompile(expr, format=True)/\1code = ibis.decompile(expr)/g' {} +
substituteInPlace pyproject.toml --replace 'sqlglot = ">=10.4.3,<12"' 'sqlglot = "*"'
'';
preCheck = ''
HOME="$TMPDIR"
export IBIS_TEST_DATA_DIRECTORY="ci/ibis-testing-data"
# copy the test data to a directory
ln -s "${ibisTestingData}" "$IBIS_TEST_DATA_DIRECTORY"
'';
postCheck = ''
rm -r "$IBIS_TEST_DATA_DIRECTORY"
'';
pythonImportsCheck = [
"ibis"
] ++ map (backend: "ibis.backends.${backend}") testBackends;
passthru = {
optional-dependencies = {
bigquery = [ db-dtypes google-cloud-bigquery google-cloud-bigquery-storage pydata-google-auth ];
clickhouse = [ clickhouse-connect sqlalchemy ];
dask = [ dask regex ];
datafusion = [ datafusion ];
druid = [ pydruid sqlalchemy ];
duckdb = [ duckdb duckdb-engine packaging sqlalchemy sqlalchemy-views ];
flink = [ ];
geospatial = [ geoalchemy2 geopandas shapely ];
mysql = [ sqlalchemy pymysql sqlalchemy-views ];
oracle = [ sqlalchemy oracledb packaging sqlalchemy-views ];
pandas = [ regex ];
polars = [ polars ];
postgres = [ psycopg2 sqlalchemy sqlalchemy-views ];
pyspark = [ pyspark sqlalchemy ];
snowflake = [ snowflake-connector-python snowflake-sqlalchemy sqlalchemy-views ];
sqlite = [ regex sqlalchemy sqlite sqlalchemy-views ];
trino = [ trino-python-client sqlalchemy sqlalchemy-views ];
visualization = [ graphviz-nox ];
decompiler = [ black ];
};
};
meta = with lib; {
description = "Productivity-centric Python Big Data Framework";
homepage = "https://github.com/ibis-project/ibis";
changelog = "https://github.com/ibis-project/ibis/blob/${version}/docs/release_notes.md";
license = licenses.asl20;
maintainers = with maintainers; [ cpcloud ];
};
}
|