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{ stdenv
, buildPythonPackage
, fetchPypi
, isPy27
, pytest
, mock
, dcm2niix
, nibabel
, pydicom
, nipype
, dcmstack
, etelemetry
, filelock
}:
buildPythonPackage rec {
version = "0.8.0";
pname = "heudiconv";
disabled = isPy27;
src = fetchPypi {
inherit pname version;
#sha256 = "0gzqqa4pzhywdbvks2qjniwhr89sgipl5k7h9hcjs7cagmy9gb05";
sha256 = "1r6y93125mc84c09970ifps5xysp8ffp62rwlzili3q2k1m3fh4v";
};
postPatch = ''
# doesn't exist as a separate package with Python 3:
substituteInPlace heudiconv/info.py --replace "'pathlib'," ""
'';
propagatedBuildInputs = [
dcm2niix nibabel pydicom nipype dcmstack etelemetry filelock
];
checkInputs = [ dcm2niix pytest mock ];
# test_monitor and test_dlad require 'inotify' and 'datalad' respectively,
# and these aren't in Nixpkgs
checkPhase = "pytest -k 'not test_dlad and not test_monitor' heudiconv/tests";
meta = with stdenv.lib; {
homepage = "https://heudiconv.readthedocs.io";
description = "Flexible DICOM converter for organizing imaging data";
license = licenses.asl20;
maintainers = with maintainers; [ bcdarwin ];
};
}
|