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{ lib
, buildPythonPackage
, fetchFromGitHub
, bokeh
, emcee
, matplotlib
, netcdf4
, numba
, numpy
, pandas
, pytest
, setuptools
, cloudpickle
, pytestCheckHook
, scipy
, packaging
, typing-extensions
, pythonOlder
, xarray
, xarray-einstats
, zarr
, h5py
, jaxlib
, torchvision
, jax
# , pymc3 (circular dependency)
, pyro-ppl
#, pystan (not packaged)
, numpyro
}:
buildPythonPackage rec {
pname = "arviz";
version = "0.12.1";
format = "setuptools";
disabled = pythonOlder "3.7";
src = fetchFromGitHub {
owner = "arviz-devs";
repo = pname;
rev = "v${version}";
hash = "sha256-5P6EXXAAS1Q2eNQuj/5JrDg0lPHfA5K4WaYfKaaXm9s=";
};
propagatedBuildInputs = [
matplotlib
netcdf4
numpy
packaging
pandas
scipy
setuptools
xarray
xarray-einstats
];
checkInputs = [
bokeh
cloudpickle
emcee
h5py
jax
jaxlib
numba
numpyro
# pymc3 (circular dependency)
pyro-ppl
# pystan (not packaged)
pytestCheckHook
torchvision
zarr
];
preCheck = ''
export HOME=$(mktemp -d);
'';
pytestFlagsArray = [
"arviz/tests/base_tests/"
];
disabledTestPaths = [
# Remove tests as dependency creates a circular dependency
"arviz/tests/external_tests/test_data_pymc.py"
];
disabledTests = [
# Tests require network access
"test_plot_separation"
"test_plot_trace_legend"
"test_cov"
];
pythonImportsCheck = [
"arviz"
];
meta = with lib; {
description = "Library for exploratory analysis of Bayesian models";
homepage = "https://arviz-devs.github.io/arviz/";
license = licenses.asl20;
maintainers = with maintainers; [ omnipotententity ];
};
}
|