1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
|
{ lib
, buildPythonPackage
, fetchFromGitHub
, bokeh
, emcee
, matplotlib
, netcdf4
, numba
, numpy
, pandas
, pytest
, scipy
, setuptools
, tensorflow-probability
, xarray
#, h5py (used by disabled tests)
#, pymc3 (broken)
#, pyro-ppl (broken)
#, pystan (not packaged)
#, numpyro (not packaged)
}:
buildPythonPackage rec {
pname = "arviz";
version = "0.6.1";
src = fetchFromGitHub {
owner = "arviz-devs";
repo = "arviz";
rev = version;
sha256 = "1qc4piz18hfik32gj4v65ckwv516mppq2ac0jyqs21lhqfwbgv9w";
};
propagatedBuildInputs = [
# needed to install
matplotlib
netcdf4
pandas
xarray
# needed to import
setuptools
# not needed to import, but used by many functions
# and is listed as a dependency in the documentation
numpy
scipy
];
checkInputs = [
bokeh
emcee
numba
pytest
tensorflow-probability
#h5py (used by disabled tests)
#pymc3 (broken)
#pyro-ppl (broken)
#pystan (not packaged)
#numpyro (not packaged)
];
# check requires pymc3 and pyro-ppl, which are currently broken, and pystan
# and numpyro, which are not yet packaged, some checks also need to make
# directories and do not have permission to do so. So we can only check part
# of the package
# Additionally, there are some failures with the plots test, which revolve
# around attempting to output .mp4 files through an interface that only wants
# to output .html files.
# The following test have been disabled as a result: data_cmdstanpy,
# data_numpyro, data_pyro, data_pystan, and plots.
checkPhase = ''
cd arviz/tests/
HOME=$TMPDIR pytest test_{data_cmdstan,data_emcee,data,data_tfp,\
diagnostics,plot_utils,rcparams,stats,stats_utils,utils}.py
'';
meta = with lib; {
description = "ArviZ is a Python package for exploratory analysis of Bayesian models";
homepage = "https://arviz-devs.github.io/arviz/";
license = licenses.asl20;
maintainers = [ maintainers.omnipotententity ];
};
}
|