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{ lib
, buildPythonPackage
, fetchFromGitHub
, emcee
, h5netcdf
, matplotlib
, netcdf4
, numba
, numpy
, pandas
, pytest
, setuptools
, cloudpickle
, pytestCheckHook
, scipy
, packaging
, typing-extensions
, pythonOlder
, xarray
, xarray-einstats
, zarr
, ffmpeg
, h5py
, jaxlib
, torchvision
, jax
# , pymc3 (circular dependency)
, pyro-ppl
#, pystan (not packaged)
, numpyro
, bokeh
}:
buildPythonPackage rec {
pname = "arviz";
version = "0.16.1";
pyproject = true;
disabled = pythonOlder "3.9";
src = fetchFromGitHub {
owner = "arviz-devs";
repo = "arviz";
rev = "refs/tags/v${version}";
hash = "sha256-kixWGj0M0flTq5rXSiPB0nfZaGYRvvMBGAJpehdW8KY=";
};
propagatedBuildInputs = [
h5netcdf
matplotlib
netcdf4
numpy
packaging
pandas
scipy
setuptools
xarray
xarray-einstats
];
nativeCheckInputs = [
cloudpickle
emcee
ffmpeg
h5py
jax
jaxlib
numba
numpyro
# pymc3 (circular dependency)
pyro-ppl
# pystan (not packaged)
pytestCheckHook
torchvision
zarr
bokeh
];
preCheck = ''
export HOME=$(mktemp -d);
'';
pytestFlagsArray = [
"arviz/tests/base_tests/"
];
disabledTests = [
# Tests require network access
"test_plot_separation"
"test_plot_trace_legend"
"test_cov"
# countourpy is not available at the moment
"test_plot_kde"
"test_plot_kde_2d"
"test_plot_pair"
# Array mismatch
"test_plot_ts"
# The following two tests fail in a common venv-based setup.
# An issue has been opened upstream: https://github.com/arviz-devs/arviz/issues/2282
"test_plot_ppc_discrete"
"test_plot_ppc_discrete_save_animation"
# Assertion error
"test_data_zarr"
];
pythonImportsCheck = [
"arviz"
];
meta = with lib; {
description = "Library for exploratory analysis of Bayesian models";
homepage = "https://arviz-devs.github.io/arviz/";
changelog = "https://github.com/arviz-devs/arviz/blob/v${version}/CHANGELOG.md";
license = licenses.asl20;
maintainers = with maintainers; [ omnipotententity ];
};
}
|