1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
|
{ lib, stdenv, buildDunePackage, fetchFromGitHub, ppx_deriving
, alcotest, angstrom-unix, biocaml, gnuplot, gsl, lacaml, menhir, owl, printbox }:
buildDunePackage rec {
pname = "phylogenetics";
version = "unstable-2020-11-23";
useDune2 = true;
src = fetchFromGitHub {
owner = "biocaml";
repo = pname;
rev = "e6e10efa0a3a8fd61bf4ab69e91a09549cc1ded6";
sha256 = "0pmypzp0rvlpzm8zpbcfkphwnhrpyfwfv44kshvx2f8nslmksh8c";
};
minimumOCamlVersion = "4.08"; # e.g., uses Float.min
checkInputs = [ alcotest ];
buildInputs = [ menhir ];
propagatedBuildInputs = [ angstrom-unix biocaml gnuplot gsl lacaml owl ppx_deriving printbox ];
doCheck = false; # many tests require bppsuite
meta = with lib; {
inherit (src.meta) homepage;
description = "Bioinformatics library for Ocaml";
maintainers = [ maintainers.bcdarwin ];
license = licenses.cecill-b;
};
}
|