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{ lib
, buildDunePackage
, fetchurl
, ppx_deriving
, bppsuite
, alcotest
, angstrom-unix
, biocaml
, core
, gsl
, lacaml
, menhir
, menhirLib
, printbox-text
}:
buildDunePackage rec {
pname = "phylogenetics";
version = "0.1.0";
src = fetchurl {
url = "https://github.com/biocaml/phylogenetics/releases/download/v${version}/${pname}-${version}.tbz";
sha256 = "sha256:064ldljzh17h8pp0c27xd1pf6c50yhccw2g3hddzhk07a95q8v16";
};
# Ensure compatibility with printbox ≥ 0.6
preConfigure = ''
substituteInPlace lib/dune --replace printbox printbox-text
'';
minimalOCamlVersion = "4.08";
checkInputs = [ alcotest bppsuite ];
buildInputs = [ menhir ];
propagatedBuildInputs = [
angstrom-unix
biocaml
core
gsl
lacaml
menhirLib
ppx_deriving
printbox-text
];
doCheck = true;
meta = with lib; {
description = "Algorithms and datastructures for phylogenetics";
homepage = "https://github.com/biocaml/phylogenetics";
license = licenses.cecill-b;
maintainers = [ maintainers.bcdarwin ];
mainProgram = "phylosim";
};
}
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