blob: ddab3439f02a0ed1f2c332bf1451bf898f2f3a58 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
|
{ stdenv, fetchFromGitHub, cmake, zlib, netcdf, nifticlib, hdf5 }:
stdenv.mkDerivation rec {
pname = "libminc";
name = "${pname}-2018-01-17";
owner = "BIC-MNI";
# current master is significantly ahead of most recent release, so use Git version:
src = fetchFromGitHub {
inherit owner;
repo = pname;
rev = "a9cbe1353eae9791b7d5b03af16e0f86922ce40b";
sha256 = "0mn4n3ihzcr1jw2g1vy6c8p4lkc88jwljk04argmj7k4djrgpxpa";
};
nativeBuildInputs = [ cmake ];
buildInputs = [ zlib netcdf nifticlib hdf5 ];
cmakeFlags = [ "-DBUILD_TESTING=${if doCheck then "TRUE" else "FALSE"}"
"-DLIBMINC_MINC1_SUPPORT=TRUE"
"-DLIBMINC_BUILD_SHARED_LIBS=TRUE"
"-DLIBMINC_USE_SYSTEM_NIFTI=TRUE" ];
checkPhase = ''
export LD_LIBRARY_PATH="$(pwd)" # see #22060
ctest -E 'ezminc_rw_test|minc_conversion' --output-on-failure
# ezminc_rw_test can't find libminc_io.so.5.2.0; minc_conversion hits netcdf compilation issue
'';
doCheck = true;
enableParallelBuilding = true;
meta = with stdenv.lib; {
homepage = "https://github.com/${owner}/${pname}";
description = "Medical imaging library based on HDF5";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
license = licenses.free;
};
}
|