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{ stdenv, fetchFromGitHub, cmake, zlib, netcdf, nifticlib, hdf5 }:
stdenv.mkDerivation rec {
pname = "libminc";
name = "${pname}-2018-01-17";
owner = "BIC-MNI";
# current master is significantly ahead of most recent release, so use Git version:
src = fetchFromGitHub {
inherit owner;
repo = pname;
rev = "a9cbe1353eae9791b7d5b03af16e0f86922ce40b";
sha256 = "0mn4n3ihzcr1jw2g1vy6c8p4lkc88jwljk04argmj7k4djrgpxpa";
};
postPatch = ''
patchShebangs .
'';
nativeBuildInputs = [ cmake ];
buildInputs = [ zlib netcdf nifticlib hdf5 ];
cmakeFlags = [
"-DLIBMINC_MINC1_SUPPORT=ON"
"-DLIBMINC_BUILD_SHARED_LIBS=ON"
"-DLIBMINC_USE_SYSTEM_NIFTI=ON"
];
doCheck = true;
checkPhase = ''
export LD_LIBRARY_PATH="$(pwd)" # see #22060
ctest -E 'ezminc_rw_test|minc_conversion' --output-on-failure
# ezminc_rw_test can't find libminc_io.so.5.2.0; minc_conversion hits netcdf compilation issue
'';
enableParallelBuilding = true;
meta = with stdenv.lib; {
homepage = "https://github.com/${owner}/${pname}";
description = "Medical imaging library based on HDF5";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
license = licenses.free;
};
}
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