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{ sage-src
, env-locations
, perl
, buildPythonPackage
, m4
, arb
, blas
, lapack
, brial
, cliquer
, cypari2
, cysignals
, cython
, lisp-compiler
, eclib
, ecm
, flint
, gd
, giac
, givaro
, glpk
, gsl
, iml
, jinja2
, lcalc
, lrcalc
, gap
, linbox
, m4ri
, m4rie
, memory-allocator
, libmpc
, mpfi
, ntl
, numpy
, pari
, pkgconfig # the python module, not the pkg-config alias
, pkg-config
, planarity
, ppl
, primecountpy
, python
, ratpoints
, readline
, rankwidth
, symmetrica
, zn_poly
, fflas-ffpack
, boost
, singular
, pip
, jupyter_core
, sage-setup
, libhomfly
, libbraiding
, gmpy2
, pplpy
, sqlite
, jupyter-client
, ipywidgets
, mpmath
, rpy2
, fpylll
, scipy
, sympy
, matplotlib
, pillow
, ipykernel
, networkx
, sphinx # TODO: this is in setup.cfg, bug should we override it?
}:
assert (!blas.isILP64) && (!lapack.isILP64);
# This is the core sage python package. Everything else is just wrappers gluing
# stuff together. It is not very useful on its own though, since it will not
# find many of its dependencies without `sage-env`, will not be tested without
# `sage-tests` and will not have html docs without `sagedoc`.
buildPythonPackage rec {
version = src.version;
pname = "sagelib";
src = sage-src;
nativeBuildInputs = [
iml
perl
jupyter_core
pkg-config
sage-setup
pip # needed to query installed packages
lisp-compiler
m4
];
buildInputs = [
gd
readline
iml
];
propagatedBuildInputs = [
cypari2
jinja2
numpy
pkgconfig
boost
arb
brial
cliquer
lisp-compiler
eclib
ecm
fflas-ffpack
flint
giac
givaro
glpk
gsl
lcalc
gap
libmpc
linbox
lrcalc
m4ri
m4rie
memory-allocator
mpfi
ntl
blas
lapack
pari
planarity
ppl
primecountpy
rankwidth
ratpoints
singular
symmetrica
zn_poly
pip
cython
cysignals
libhomfly
libbraiding
gmpy2
pplpy
sqlite
mpmath
rpy2
scipy
sympy
matplotlib
pillow
ipykernel
fpylll
networkx
jupyter-client
ipywidgets
sphinx
];
preBuild = ''
export SAGE_ROOT="$PWD"
export SAGE_LOCAL="$SAGE_ROOT"
export SAGE_SHARE="$SAGE_LOCAL/share"
# set locations of dependencies (needed for nbextensions like threejs)
. ${env-locations}/sage-env-locations
export JUPYTER_PATH="$SAGE_LOCAL/jupyter"
export PATH="$SAGE_ROOT/build/bin:$SAGE_ROOT/src/bin:$PATH"
export SAGE_NUM_THREADS="$NIX_BUILD_CORES"
mkdir -p "$SAGE_SHARE/sage/ext/notebook-ipython"
mkdir -p "var/lib/sage/installed"
cd build/pkgs/sagelib
# some files, like Pipfile, pyproject.toml, requirements.txt and setup.cfg
# are generated by the bootstrap script using m4. these can fetch data from
# build/pkgs, either directly or via sage-get-system-packages.
sed -i '/sage_conf/d' src/setup.cfg.m4
sed -i '/sage_conf/d' src/requirements.txt.m4
# version lower bounds are useful, but upper bounds are a hassle because
# Sage tests already catch any relevant API breakage.
# according to the discussion at https://trac.sagemath.org/ticket/33520,
# upper bounds will be less noisy starting from Sage 9.6.
sed -i 's/==2.1.0rc1/>=2.1.1/' ../gmpy2/install-requires.txt
sed -i 's/, <[^, ]*//' ../*/install-requires.txt
for infile in src/*.m4; do
if [ -f "$infile" ]; then
outfile="src/$(basename $infile .m4)"
m4 "$infile" > "$outfile"
fi
done
cd src
'';
postInstall = ''
rm -r "$out/${python.sitePackages}/sage/cython_debug"
'';
doCheck = false; # we will run tests in sage-tests.nix
}
|