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{ stdenv
, fetchFromGitHub
, fetchpatch
}:
stdenv.mkDerivation rec {
version = "8.2";
name = "sage-src-${version}";
src = fetchFromGitHub {
owner = "sagemath";
repo = "sage";
rev = version;
sha256 = "0d7vc16s7dj23an2cb8v5bhbnc6nsw20qhnnxr0xh8qg629027b8";
};
nixPatches = [
# https://trac.sagemath.org/ticket/25309
(fetchpatch {
name = "spkg-paths.patch";
url = "https://git.sagemath.org/sage.git/patch/?h=97f06fddee920399d4fcda65aa9b0925774aec69&id=a86151429ccce1ddd085e8090ada8ebdf02f3310";
sha256 = "1xb9108rzzkdhn71vw44525620d3ww9jv1fph5a77v9y7nf9wgr7";
})
(fetchpatch {
name = "maxima-fas.patch";
url = "https://git.sagemath.org/sage.git/patch/?h=97f06fddee920399d4fcda65aa9b0925774aec69";
sha256 = "14s50yg3hpw9cp3v581dx7zfmpm2j972im7x30iwki8k45mjvk3i";
})
# https://trac.sagemath.org/ticket/25328
# https://trac.sagemath.org/ticket/25546
# https://trac.sagemath.org/ticket/25722
(fetchpatch {
name = "install-jupyter-kernel-in-correct-prefix.patch";
url = "https://git.sagemath.org/sage.git/patch?id=72167b98e3f64326df6b2c78785df25539472fcc";
sha256 = "0pscnjhm7r2yr2rxnv4kkkq626vwaja720lixa3m3w9rwlxll5a7";
})
./patches/test-in-tmpdir.patch
# https://trac.sagemath.org/ticket/25358
(fetchpatch {
name = "safe-directory-test-without-patch.patch";
url = "https://git.sagemath.org/sage.git/patch?id2=8bdc326ba57d1bb9664f63cf165a9e9920cc1afc&id=dc673c17555efca611f68398d5013b66e9825463";
sha256 = "1hhannz7xzprijakn2w2d0rhd5zv2zikik9p51i87bas3nc658f7";
})
# https://trac.sagemath.org/ticket/25357 rebased on 8.2
./patches/python3-syntax-without-write.patch
# https://trac.sagemath.org/ticket/25314
(fetchpatch {
name = "make-qepcad-test-optional.patch";
url = "https://git.sagemath.org/sage.git/patch/?h=fe294c58bd035ef427e268901d54a6faa0058138";
sha256 = "003d5baf5c0n5rfg010ijwkwz8kg0s414cxwczs2vhdayxdixbix";
})
# https://trac.sagemath.org/ticket/25316
./patches/python-5755-hotpatch.patch
# https://trac.sagemath.org/ticket/25354
# https://trac.sagemath.org/ticket/25531
(fetchpatch {
name = "cysignals-include.patch";
url = "https://git.sagemath.org/sage.git/patch/?h=28778bd25a37c80884d2b24e0683fb2989300cef";
sha256 = "0fiiiw91pgs8avm9ggj8hb64bhqzl6jcw094d94nhirmh8w2jmc5";
})
# https://trac.sagemath.org/ticket/25315
(fetchpatch {
name = "find-libraries-in-dyld-library-path.patch";
url = "https://git.sagemath.org/sage.git/patch/?h=20d4593876ce9c6004eac2ab6fd61786d0d96a06";
sha256 = "1k3afq3qlzmgqwx6rzs5wv153vv9dsf5rk8pi61g57l3r3npbjmc";
})
# Pari upstream has since accepted a patch, so this patch won't be necessary once sage updates pari.
# https://trac.sagemath.org/ticket/25312
./patches/pari-stackwarn.patch
# https://trac.sagemath.org/ticket/25311
./patches/zn_poly_version.patch
# https://trac.sagemath.org/ticket/25345
# (upstream patch doesn't apply on 8.2 source)
./patches/dochtml-optional.patch
];
packageUpgradePatches = [
(fetchpatch {
name = "cypari2-1.2.1.patch";
url = "https://git.sagemath.org/sage.git/patch/?h=62fe6eb15111327d930336d4252d5b23cbb22ab9";
sha256 = "1xax7vvs8h4xip16xcsp47xdb6lig6f2r3pl8cksvlz8lhgbyxh2";
})
# matplotlib 2.2.2 deprecated `normed` (replaced by `density`).
# This patch only ignores the warning. It would be equally easy to fix it
# (by replacing all mentions of `normed` by `density`), but its better to
# stay close to sage upstream. I didn't open an upstream ticket about it
# because the matplotlib update also requires a new dependency (kiwisolver)
# and I don't want to invest the time to learn how to add it.
./patches/matplotlib-normed-deprecated.patch
# Update to 20171219 broke the doctests because of insignificant precision
# changes, make the doctests less fragile.
# I didn't open an upstream ticket because its not entirely clear if
# 20171219 is really "released" yet. It is listed on the github releases
# page, but not marked as "latest release" and the homepage still links to
# the last version.
./patches/eclib-regulator-precision.patch
# sphinx 1.6 -> 1.7 upgrade
# https://trac.sagemath.org/ticket/24935
./patches/sphinx-1.7.patch
# Adapt hashes to new boost version
# https://trac.sagemath.org/ticket/22243
# (this ticket doesn't only upgrade boost but also avoids this problem in the future)
(fetchpatch {
name = "boost-upgrade.patch";
url = "https://git.sagemath.org/sage.git/patch?id=a24a9c6b30b93957333a3116196214a931325b69";
sha256 = "0z3870g2ms2a81vnw08dc2i4k7jr62w8fggvcdwaavgd1wvdxwfl";
})
# gfan 0.6.2
# https://trac.sagemath.org/ticket/23353
(fetchpatch {
name = "gfan-update.patch";
url = "https://git.sagemath.org/sage.git/patch/?h=420215fc469cde733ec7a339e59b78ad6eec804c&id=112498a293ea2bf563e41aed35f1aa608f01b349";
sha256 = "0ga3hkx8cr23dpc919lgvpi5lmy0d728jkq9z6kf0fl9s8g31mxb";
})
# New glpk version has new warnings, filter those out until upstream sage has found a solution
# https://trac.sagemath.org/ticket/24824
(fetchpatch {
url = "https://salsa.debian.org/science-team/sagemath/raw/58bbba93a807ca2933ca317501d093a1bb4b84db/debian/patches/dt-version-glpk-4.65-ignore-warnings.patch";
sha256 = "0b9293v73wb4x13wv5zwyjgclc01zn16msccfzzi6znswklgvddp";
stripLen = 1;
})
# https://trac.sagemath.org/ticket/25329
(fetchpatch {
name = "dont-check-exact-glpk-version.patch";
url = "https://git.sagemath.org/sage.git/patch?id2=8bdc326ba57d1bb9664f63cf165a9e9920cc1afc&id=89d068d8d77316bfffa6bf8e9ebf70b3b3b88e5c";
sha256 = "00knwxs6fmymfgfl0q5kcavmxm9sf90a4r76y35n5s55gj8pl918";
})
# https://trac.sagemath.org/ticket/25355
(fetchpatch {
name = "maxima-5.41.0.patch";
url = "https://git.sagemath.org/sage.git/patch/?id=87328023c4739abdf24108038201e3fa9bdfc739";
sha256 = "0hxi7qr5mfx1bc32r8j7iba4gzd7c6v63asylyf5cbyp86azpb7i";
})
# Update cddlib from 0.94g to 0.94h.
# https://trac.sagemath.org/ticket/25341 (doesn't apply to 8.2 sources)
(fetchpatch {
url = "https://salsa.debian.org/science-team/sagemath/raw/58bbba93a807ca2933ca317501d093a1bb4b84db/debian/patches/u2-version-cddlib-094h.patch";
sha256 = "0fmw7pzbaxs2dshky6iw9pr8i23p9ih2y2lw661qypdrxh5xw03k";
stripLen = 1;
})
(fetchpatch {
name = "revert-cddlib-doctest-changes.patch";
url = "https://git.sagemath.org/sage.git/patch/?id=269c1e1551285566b8ba7a2b890989e5590e9f11";
sha256 = "12bcjhq7hm2pmmj2bgjvcffjyls2x7q61ivlnaj5v5bsvhc183iy";
revert = true;
})
# Only formatting changes.
# https://trac.sagemath.org/ticket/25260
./patches/numpy-1.14.3.patch
# https://trac.sagemath.org/ticket/24374
(fetchpatch {
name = "networkx-2.1.patch";
url = "https://salsa.debian.org/science-team/sagemath/raw/487df9ae48ca1d93d9b1cb3af8745d31e30fb741/debian/patches/u0-version-networkx-2.1.patch";
sha256 = "1xxxawygbgxgvlv7b4w8hhzgdnva4rhmgdxaiaa3pwdwln0yc750";
stripLen = 1;
})
# https://trac.sagemath.org/ticket/24927 rebased
./patches/arb-2.13.0.patch
# https://trac.sagemath.org/ticket/24838 rebased
./patches/pynac-0.7.22.patch
# https://trac.sagemath.org/ticket/25862
./patches/eclib-20180710.patch
];
patches = nixPatches ++ packageUpgradePatches;
postPatch = ''
# make sure shebangs etc are fixed, but sage-python23 still works
find . -type f -exec sed \
-e 's/sage-python23/python/g' \
-i {} \;
echo '#!${stdenv.shell}
python "$@"' > build/bin/sage-python23
# Do not use sage-env-config (generated by ./configure).
# Instead variables are set manually.
echo '# do nothing' > src/bin/sage-env-config
'';
configurePhase = "# do nothing";
buildPhase = "# do nothing";
installPhase = ''
cp -r . "$out"
'';
}
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