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{ stdenv, fetchurl, bzip2, gfortran, libX11, libXmu, libXt, libjpeg, libpng
, libtiff, ncurses, pango, pcre, perl, readline, tcl, texLive, tk, xz, zlib
, less, texinfo, graphviz, icu, pkgconfig, bison, imake, which, jdk, openblas
, curl, Cocoa, Foundation, libobjc, libcxx, tzdata, fetchpatch
, withRecommendedPackages ? true
, enableStrictBarrier ? false
# R as of writing does not support outputting both .so and .a files; it outputs:
# --enable-R-static-lib conflicts with --enable-R-shlib and will be ignored
, static ? false
, javaSupport ? (!stdenv.hostPlatform.isAarch32 && !stdenv.hostPlatform.isAarch64)
}:
stdenv.mkDerivation rec {
name = "R-3.6.1";
src = fetchurl {
url = "https://cran.r-project.org/src/base/R-3/${name}.tar.gz";
sha256 = "128kifbq0w25y8aq77w289ddax5i5w2djcfsqgffrb3i7syrxajv";
};
dontUseImakeConfigure = true;
buildInputs = [
bzip2 gfortran libX11 libXmu libXt libXt libjpeg libpng libtiff ncurses
pango pcre perl readline texLive xz zlib less texinfo graphviz icu
pkgconfig bison imake which openblas curl
] ++ stdenv.lib.optionals (!stdenv.isDarwin) [ tcl tk ]
++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ]
++ stdenv.lib.optional javaSupport jdk;
patches = [
./no-usr-local-search-paths.patch
];
prePatch = stdenv.lib.optionalString stdenv.isDarwin ''
substituteInPlace configure --replace "-install_name libR.dylib" "-install_name $out/lib/R/lib/libR.dylib"
'';
dontDisableStatic = static;
preConfigure = ''
configureFlagsArray=(
--disable-lto
--with${stdenv.lib.optionalString (!withRecommendedPackages) "out"}-recommended-packages
--with-blas="-L${openblas}/lib -lopenblas"
--with-lapack="-L${openblas}/lib -lopenblas"
--with-readline
--with-tcltk --with-tcl-config="${tcl}/lib/tclConfig.sh" --with-tk-config="${tk}/lib/tkConfig.sh"
--with-cairo
--with-libpng
--with-jpeglib
--with-libtiff
--with-ICU
${stdenv.lib.optionalString enableStrictBarrier "--enable-strict-barrier"}
${if static then "--enable-R-static-lib" else "--enable-R-shlib"}
AR=$(type -p ar)
AWK=$(type -p gawk)
CC=$(type -p cc)
CXX=$(type -p c++)
FC="${gfortran}/bin/gfortran" F77="${gfortran}/bin/gfortran"
${stdenv.lib.optionalString javaSupport "JAVA_HOME=\"${jdk}\""}
RANLIB=$(type -p ranlib)
R_SHELL="${stdenv.shell}"
'' + stdenv.lib.optionalString stdenv.isDarwin ''
--without-tcltk
--without-aqua
--disable-R-framework
OBJC="clang"
CPPFLAGS="-isystem ${libcxx}/include/c++/v1"
LDFLAGS="-L${libcxx}/lib"
'' + ''
)
echo >>etc/Renviron.in "TCLLIBPATH=${tk}/lib"
echo >>etc/Renviron.in "TZDIR=${tzdata}/share/zoneinfo"
'';
installTargets = [ "install" "install-info" "install-pdf" ];
# The store path to "which" is baked into src/library/base/R/unix/system.unix.R,
# but Nix cannot detect it as a run-time dependency because the installed file
# is compiled and compressed, which hides the store path.
postFixup = "echo ${which} > $out/nix-support/undetected-runtime-dependencies";
doCheck = true;
preCheck = "export TZ=CET; bin/Rscript -e 'sessionInfo()'";
enableParallelBuilding = true;
setupHook = ./setup-hook.sh;
meta = with stdenv.lib; {
homepage = http://www.r-project.org/;
description = "Free software environment for statistical computing and graphics";
license = licenses.gpl2Plus;
longDescription = ''
GNU R is a language and environment for statistical computing and
graphics that provides a wide variety of statistical (linear and
nonlinear modelling, classical statistical tests, time-series
analysis, classification, clustering, ...) and graphical
techniques, and is highly extensible. One of R's strengths is the
ease with which well-designed publication-quality plots can be
produced, including mathematical symbols and formulae where
needed. R is an integrated suite of software facilities for data
manipulation, calculation and graphical display. It includes an
effective data handling and storage facility, a suite of operators
for calculations on arrays, in particular matrices, a large,
coherent, integrated collection of intermediate tools for data
analysis, graphical facilities for data analysis and display
either on-screen or on hardcopy, and a well-developed, simple and
effective programming language which includes conditionals, loops,
user-defined recursive functions and input and output facilities.
'';
platforms = platforms.all;
hydraPlatforms = platforms.linux;
maintainers = with maintainers; [ peti timokau ];
};
}
|