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{ stdenv, fetchurl, bzip2, gfortran, libX11, libXmu, libXt, libjpeg, libpng
, libtiff, ncurses, pango, pcre2, perl, readline, tcl, texLive, tk, xz, zlib
, less, texinfo, graphviz, icu, pkgconfig, bison, imake, which, jdk, blas, lapack
, curl, Cocoa, Foundation, libobjc, libcxx, tzdata, fetchpatch
, withRecommendedPackages ? true
, enableStrictBarrier ? false
# R as of writing does not support outputting both .so and .a files; it outputs:
# --enable-R-static-lib conflicts with --enable-R-shlib and will be ignored
, static ? false
}:
assert (!blas.isILP64) && (!lapack.isILP64);
stdenv.mkDerivation rec {
name = "R-4.0.0";
src = fetchurl {
url = "https://cran.r-project.org/src/base/R-4/${name}.tar.gz";
sha256 = "0h1995smlyiyhx7gpg9paxsfqrcn6g9bbp5h9r47i6an3clv1gh6";
};
dontUseImakeConfigure = true;
buildInputs = [
bzip2 gfortran libX11 libXmu libXt libXt libjpeg libpng libtiff ncurses
pango pcre2 perl readline texLive xz zlib less texinfo graphviz icu
pkgconfig bison imake which blas lapack curl tcl tk jdk
] ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ];
patches = [
./no-usr-local-search-paths.patch
./fix-failing-test.patch
];
prePatch = stdenv.lib.optionalString stdenv.isDarwin ''
substituteInPlace configure --replace "-install_name libR.dylib" "-install_name $out/lib/R/lib/libR.dylib"
'';
dontDisableStatic = static;
preConfigure = ''
configureFlagsArray=(
--disable-lto
--with${stdenv.lib.optionalString (!withRecommendedPackages) "out"}-recommended-packages
--with-blas="-L${blas}/lib -lblas"
--with-lapack="-L${lapack}/lib -llapack"
--with-readline
--with-tcltk --with-tcl-config="${tcl}/lib/tclConfig.sh" --with-tk-config="${tk}/lib/tkConfig.sh"
--with-cairo
--with-libpng
--with-jpeglib
--with-libtiff
--with-ICU
${stdenv.lib.optionalString enableStrictBarrier "--enable-strict-barrier"}
${if static then "--enable-R-static-lib" else "--enable-R-shlib"}
AR=$(type -p ar)
AWK=$(type -p gawk)
CC=$(type -p cc)
CXX=$(type -p c++)
FC="${gfortran}/bin/gfortran" F77="${gfortran}/bin/gfortran"
JAVA_HOME="${jdk}"
RANLIB=$(type -p ranlib)
R_SHELL="${stdenv.shell}"
'' + stdenv.lib.optionalString stdenv.isDarwin ''
--disable-R-framework
OBJC="clang"
CPPFLAGS="-isystem ${libcxx}/include/c++/v1"
LDFLAGS="-L${libcxx}/lib"
'' + ''
)
echo >>etc/Renviron.in "TCLLIBPATH=${tk}/lib"
echo >>etc/Renviron.in "TZDIR=${tzdata}/share/zoneinfo"
'';
installTargets = [ "install" "install-info" "install-pdf" ];
# The store path to "which" is baked into src/library/base/R/unix/system.unix.R,
# but Nix cannot detect it as a run-time dependency because the installed file
# is compiled and compressed, which hides the store path.
postFixup = "echo ${which} > $out/nix-support/undetected-runtime-dependencies";
doCheck = true;
preCheck = "export TZ=CET; bin/Rscript -e 'sessionInfo()'";
enableParallelBuilding = true;
setupHook = ./setup-hook.sh;
meta = with stdenv.lib; {
homepage = "http://www.r-project.org/";
description = "Free software environment for statistical computing and graphics";
license = licenses.gpl2Plus;
longDescription = ''
GNU R is a language and environment for statistical computing and
graphics that provides a wide variety of statistical (linear and
nonlinear modelling, classical statistical tests, time-series
analysis, classification, clustering, ...) and graphical
techniques, and is highly extensible. One of R's strengths is the
ease with which well-designed publication-quality plots can be
produced, including mathematical symbols and formulae where
needed. R is an integrated suite of software facilities for data
manipulation, calculation and graphical display. It includes an
effective data handling and storage facility, a suite of operators
for calculations on arrays, in particular matrices, a large,
coherent, integrated collection of intermediate tools for data
analysis, graphical facilities for data analysis and display
either on-screen or on hardcopy, and a well-developed, simple and
effective programming language which includes conditionals, loops,
user-defined recursive functions and input and output facilities.
'';
platforms = platforms.all;
hydraPlatforms = platforms.linux;
maintainers = with maintainers; [ peti timokau ];
};
}
|