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{ lib, stdenv, fetchurl, bzip2, gfortran, libX11, libXmu, libXt, libjpeg, libpng
, libtiff, ncurses, pango, pcre2, perl, readline, tcl, texlive, texliveSmall, tk, xz, zlib
, less, texinfo, graphviz, icu, pkg-config, bison, imake, which, jdk, blas, lapack
, curl, Cocoa, Foundation, libobjc, libcxx, tzdata
, withRecommendedPackages ? true
, enableStrictBarrier ? false
, enableMemoryProfiling ? false
# R as of writing does not support outputting both .so and .a files; it outputs:
# --enable-R-static-lib conflicts with --enable-R-shlib and will be ignored
, static ? false
, testers
}:
assert (!blas.isILP64) && (!lapack.isILP64);
stdenv.mkDerivation (finalAttrs: {
pname = "R";
version = "4.3.2";
src = let
inherit (finalAttrs) pname version;
in fetchurl {
url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz";
sha256 = "sha256-s/V2CsLu6AJqPw7vyyW0dyPZeAOO7o6ER2IJTIYMRSo=";
};
outputs = [ "out" "tex" ];
dontUseImakeConfigure = true;
nativeBuildInputs = [ pkg-config ];
buildInputs = [
bzip2 gfortran libX11 libXmu libXt libXt libjpeg libpng libtiff ncurses
pango pcre2 perl readline (texliveSmall.withPackages (ps: with ps; [ inconsolata helvetic ps.texinfo fancyvrb cm-super rsfs ])) xz zlib less texinfo graphviz icu
bison imake which blas lapack curl tcl tk jdk tzdata
] ++ lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ];
patches = [
./no-usr-local-search-paths.patch
];
# Test of the examples for package 'tcltk' fails in Darwin sandbox. See:
# https://github.com/NixOS/nixpkgs/issues/146131
postPatch = lib.optionalString stdenv.isDarwin ''
substituteInPlace configure \
--replace "-install_name libRblas.dylib" "-install_name $out/lib/R/lib/libRblas.dylib" \
--replace "-install_name libRlapack.dylib" "-install_name $out/lib/R/lib/libRlapack.dylib" \
--replace "-install_name libR.dylib" "-install_name $out/lib/R/lib/libR.dylib"
substituteInPlace tests/Examples/Makefile.in \
--replace "test-Examples: test-Examples-Base" "test-Examples:" # do not test the examples
'';
dontDisableStatic = static;
preConfigure = ''
configureFlagsArray=(
--disable-lto
--with${lib.optionalString (!withRecommendedPackages) "out"}-recommended-packages
--with-blas="-L${blas}/lib -lblas"
--with-lapack="-L${lapack}/lib -llapack"
--with-readline
--with-tcltk --with-tcl-config="${tcl}/lib/tclConfig.sh" --with-tk-config="${tk}/lib/tkConfig.sh"
--with-cairo
--with-libpng
--with-jpeglib
--with-libtiff
--with-ICU
${lib.optionalString enableStrictBarrier "--enable-strict-barrier"}
${lib.optionalString enableMemoryProfiling "--enable-memory-profiling"}
${if static then "--enable-R-static-lib" else "--enable-R-shlib"}
AR=$(type -p ar)
AWK=$(type -p gawk)
CC=$(type -p cc)
CXX=$(type -p c++)
FC="${gfortran}/bin/gfortran" F77="${gfortran}/bin/gfortran"
JAVA_HOME="${jdk}"
RANLIB=$(type -p ranlib)
r_cv_have_curl728=yes
R_SHELL="${stdenv.shell}"
'' + lib.optionalString stdenv.isDarwin ''
--disable-R-framework
--without-x
OBJC="clang"
CPPFLAGS="-isystem ${lib.getDev libcxx}/include/c++/v1"
LDFLAGS="-L${lib.getLib libcxx}/lib"
'' + ''
)
echo >>etc/Renviron.in "TCLLIBPATH=${tk}/lib"
echo >>etc/Renviron.in "TZDIR=${tzdata}/share/zoneinfo"
'';
installTargets = [ "install" "install-info" "install-pdf" ];
# move tex files to $tex for use with texlive.combine
# add link in $out since ${R_SHARE_DIR}/texmf is hardcoded in several places
postInstall = ''
mv -T "$out/lib/R/share/texmf" "$tex"
ln -s "$tex" "$out/lib/R/share/texmf"
'';
# The store path to "which" is baked into src/library/base/R/unix/system.unix.R,
# but Nix cannot detect it as a run-time dependency because the installed file
# is compiled and compressed, which hides the store path.
postFixup = "echo ${which} > $out/nix-support/undetected-runtime-dependencies";
doCheck = true;
preCheck = "export HOME=$TMPDIR; export TZ=CET; bin/Rscript -e 'sessionInfo()'";
enableParallelBuilding = true;
setupHook = ./setup-hook.sh;
passthru.tests.pkg-config = testers.testMetaPkgConfig finalAttrs.finalPackage;
# make tex output available to texlive.combine
passthru.pkgs = [ finalAttrs.finalPackage.tex ];
passthru.tlType = "run";
# dependencies (based on \RequirePackage in jss.cls, Rd.sty, Sweave.sty)
passthru.tlDeps = with texlive; [ amsfonts amsmath fancyvrb graphics hyperref iftex jknapltx latex lm tools upquote url ];
meta = with lib; {
homepage = "http://www.r-project.org/";
description = "Free software environment for statistical computing and graphics";
license = licenses.gpl2Plus;
longDescription = ''
GNU R is a language and environment for statistical computing and
graphics that provides a wide variety of statistical (linear and
nonlinear modelling, classical statistical tests, time-series
analysis, classification, clustering, ...) and graphical
techniques, and is highly extensible. One of R's strengths is the
ease with which well-designed publication-quality plots can be
produced, including mathematical symbols and formulae where
needed. R is an integrated suite of software facilities for data
manipulation, calculation and graphical display. It includes an
effective data handling and storage facility, a suite of operators
for calculations on arrays, in particular matrices, a large,
coherent, integrated collection of intermediate tools for data
analysis, graphical facilities for data analysis and display
either on-screen or on hardcopy, and a well-developed, simple and
effective programming language which includes conditionals, loops,
user-defined recursive functions and input and output facilities.
'';
pkgConfigModules = [ "libR" ];
platforms = platforms.all;
maintainers = with maintainers; [ jbedo ] ++ teams.sage.members;
};
})
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