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|
{ gccStdenv, fetchFromGitLab, zlib }:
let
stdenv = gccStdenv;
meta = with stdenv.lib; {
description = "Fast and exact comparison and clustering of sequences";
homepage = https://metabarcoding.org/sumatra;
maintainers = [ maintainers.bzizou ];
platforms = platforms.unix;
};
in rec {
# Suma library
sumalibs = stdenv.mkDerivation rec {
version = "1.0.34";
pname = "sumalibs";
src = fetchFromGitLab {
domain = "git.metabarcoding.org";
owner = "obitools";
repo = pname;
rev = "sumalib_v${version}";
sha256 = "0hwkrxzfz7m5wdjvmrhkjg8kis378iaqr5n4nhdhkwwhn8x1jn5a";
};
makeFlags = [ "PREFIX=$(out)" ];
inherit meta;
};
# Sumatra
sumatra = stdenv.mkDerivation rec {
version = "1.0.34";
pname = "sumatra";
src = fetchFromGitLab {
domain = "git.metabarcoding.org";
owner = "obitools";
repo = pname;
rev = "${pname}_v${version}";
sha256 = "1bbpbdkshdc3xffqnr1qfy8qk64ldsmdc3s8mrcrlx132rgbi5f6";
};
buildInputs = [ sumalibs zlib ];
makeFlags = [
"LIBSUMA=${sumalibs}/lib/libsuma.a"
"LIBSUMAPATH=-L${sumalibs}"
"PREFIX=$(out)"
];
inherit meta;
};
# Sumaclust
sumaclust = stdenv.mkDerivation rec {
version = "1.0.34";
pname = "sumaclust";
src = fetchFromGitLab {
domain = "git.metabarcoding.org";
owner = "obitools";
repo = pname;
rev = "${pname}_v${version}";
sha256 = "0x8yi3k3jxhmv2krp4rcjlj2f9zg0qrk7gx4kpclf9c3yxgsgrds";
};
buildInputs = [ sumalibs ];
makeFlags = [
"LIBSUMA=${sumalibs}/lib/libsuma.a"
"LIBSUMAPATH=-L${sumalibs}"
"PREFIX=$(out)"
];
inherit meta;
};
}
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