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{ lib, stdenv
, fetchFromGitHub
, useMpi ? false
, mpi
}:
stdenv.mkDerivation rec {
pname = "RAxML${lib.optionalString useMpi "-mpi"}";
version = "8.2.13";
src = fetchFromGitHub {
owner = "stamatak";
repo = "standard-RAxML";
rev = "v${version}";
sha256 = "sha256-w+Eqi0GhVira1H6ZnMNeZGBMzDjiGT7JSFpQEVXONyk=";
};
buildInputs = lib.optionals useMpi [ mpi ];
# TODO darwin, AVX and AVX2 makefile targets
buildPhase = if useMpi then ''
make -f Makefile.MPI.gcc
'' else ''
make -f Makefile.SSE3.PTHREADS.gcc
'';
installPhase = if useMpi then ''
mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
'' else ''
mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
'';
meta = with lib; {
description = "A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies";
license = licenses.gpl3;
homepage = "https://sco.h-its.org/exelixis/web/software/raxml/";
maintainers = [ maintainers.unode ];
platforms = [ "i686-linux" "x86_64-linux" ];
};
}
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