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{ lib, stdenv, fetchFromGitHub, zlib, blas, lapack, darwin}:
stdenv.mkDerivation rec {
pname = "plink-ng";
version = "1.90b3";
src = fetchFromGitHub {
owner = "chrchang";
repo = "plink-ng";
rev = "v${version}";
sha256 = "1zhffjbwpd50dxywccbnv1rxy9njwz73l4awc5j7i28rgj3davcq";
};
buildInputs = [ zlib ] ++ (if stdenv.isDarwin then [ darwin.apple_sdk.frameworks.Accelerate ] else [ blas lapack ]) ;
preBuild = ''
sed -i 's|zlib-1.2.8/zlib.h|zlib.h|g' *.c *.h
${lib.optionalString stdenv.cc.isClang "sed -i 's|g++|clang++|g' Makefile.std"}
makeFlagsArray+=(
ZLIB=-lz
BLASFLAGS="-lblas -lcblas -llapack"
);
'';
makefile = "Makefile.std";
installPhase = ''
mkdir -p $out/bin
cp plink $out/bin
'';
meta = {
broken = (stdenv.isLinux && stdenv.isAarch64);
description = "A comprehensive update to the PLINK association analysis toolset";
homepage = "https://www.cog-genomics.org/plink2";
license = lib.licenses.gpl3;
platforms = lib.platforms.linux;
};
}
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