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{ stdenv, lib, fetchFromGitHub, python, makeWrapper
, eigen, fftw, libtiff, zlib, ants, bc
, qt5, libGL, libGLU, libX11, libXext
, withGui ? true }:
stdenv.mkDerivation rec {
pname = "mrtrix";
version = "3.0_RC3_latest";
src = fetchFromGitHub {
owner = "MRtrix3";
repo = "mrtrix3";
rev = version;
sha256 = "184nv524p8j94qicjy9l288bqcgl2yxqqs55a7042i0gfsnwp51c";
fetchSubmodules = true;
};
nativeBuildInputs = [ eigen makeWrapper ] ++ lib.optional withGui qt5.wrapQtAppsHook;
buildInputs = [
ants
python
fftw
libtiff
zlib ] ++ lib.optionals withGui [
libGL
libGLU
libX11
libXext
qt5.qtbase
qt5.qtsvg
];
installCheckInputs = [ bc ];
postPatch = ''
patchShebangs ./build ./configure ./run_tests ./bin/population_template
substituteInPlace ./run_tests \
--replace 'git submodule update --init >> $LOGFILE 2>&1' ""
'';
configurePhase = ''
export EIGEN_CFLAGS="-isystem ${eigen}/include/eigen3"
unset LD # similar to https://github.com/MRtrix3/mrtrix3/issues/1519
./configure ${lib.optionalString (!withGui) "-nogui"};
'';
buildPhase = ''
./build
(cd testing && ../build)
'';
installCheckPhase = "./run_tests";
doInstallCheck = true;
installPhase = ''
runHook preInstall
mkdir -p $out
cp -ar lib $out/lib
cp -ar bin $out/bin
runHook postInstall
'';
postInstall = ''
for prog in $out/bin/*; do
wrapProgram $prog --prefix PATH : ${lib.makeBinPath [ ants ]}
done
'';
meta = with lib; {
homepage = "https://github.com/MRtrix3/mrtrix3";
description = "Suite of tools for diffusion imaging";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.linux;
license = licenses.mpl20;
};
}
|