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{stdenv, fetchFromGitHub, zlib, python, bzip2, lzma}:
stdenv.mkDerivation rec {
pname = "bedtools";
version = "2.29.0";
src = fetchFromGitHub {
owner = "arq5x";
repo = "bedtools2";
rev = "v${version}";
sha256 = "0d6i985qqxp92ddq4n6558m70qi5rqhl724wrfys0hm0p6a9h56x";
};
buildInputs = [ zlib python bzip2 lzma ];
cc = if stdenv.cc.isClang then "clang++" else "g++";
buildPhase = "make prefix=$out SHELL=${stdenv.shell} CXX=${cc} -j $NIX_BUILD_CORES";
installPhase = "make prefix=$out SHELL=${stdenv.shell} CXX=${cc} install";
meta = with stdenv.lib; {
description = "A powerful toolset for genome arithmetic.";
license = licenses.gpl2;
homepage = https://bedtools.readthedocs.io/en/latest/;
maintainers = with maintainers; [ jbedo ];
platforms = platforms.unix;
};
}
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