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{ stdenv
, lib
, fetchurl
, makeWrapper
, autoPatchelfHook
, jdk11
, makeDesktopItem
, copyDesktopItems
, runtimeShell
}:
stdenv.mkDerivation rec {
pname = "fiji";
version = "20201104-1356";
src = fetchurl {
url = "https://downloads.imagej.net/${pname}/archive/${version}/${pname}-nojre.tar.gz";
sha256 = "1jv4wjjkpid5spr2nk5xlvq3hg687qx1n5zh8zlw48y1y09c4q7a";
};
dontBuild = true;
nativeBuildInputs = [ autoPatchelfHook makeWrapper copyDesktopItems ];
buildInputs = [ stdenv.cc.cc.lib ];
desktopItems = [
(makeDesktopItem {
name = "fiji";
exec = "fiji %F";
tryExec = "fiji";
icon = "fiji";
mimeTypes = [ "image/*" ];
comment = "Scientific Image Analysis";
desktopName = "Fiji Is Just ImageJ";
genericName = "Fiji Is Just ImageJ";
categories = [ "Education" "Science" "ImageProcessing" ];
startupNotify = true;
startupWMClass = "fiji-Main";
})
];
installPhase = ''
runHook preInstall
mkdir -p $out/{bin,fiji,share/pixmaps}
cp -R * $out/fiji
rm -f $out/fiji/jars/imagej-updater-*.jar
# Disgusting hack to stop a local desktop entry being created
cat <<EOF > $out/bin/.fiji-launcher-hack
#!${runtimeShell}
exec \$($out/fiji/ImageJ-linux64 --dry-run "\$@")
EOF
chmod +x $out/bin/.fiji-launcher-hack
makeWrapper $out/bin/.fiji-launcher-hack $out/bin/fiji \
--prefix PATH : ${lib.makeBinPath [ jdk11 ]} \
--set JAVA_HOME ${jdk11.home}
ln $out/fiji/images/icon.png $out/share/pixmaps/fiji.png
runHook postInstall
'';
meta = with lib; {
homepage = "https://imagej.net/software/fiji/";
description = "batteries-included distribution of ImageJ2, bundling a lot of plugins which facilitate scientific image analysis";
platforms = [ "x86_64-linux" ];
sourceProvenance = with sourceTypes; [
binaryBytecode
binaryNativeCode
];
license = with lib.licenses; [ gpl2Plus gpl3Plus bsd2 publicDomain ];
maintainers = with maintainers; [ zane ];
};
}
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