1 files changed, 25 insertions, 15 deletions

diff --git a/pkgs/tools/filesystems/irods/default.nix b/pkgs/tools/filesystems/irods/default.nix
index b6099c099f3..8dfdd96dbeb 100644
--- a/pkgs/tools/filesystems/irods/default.nix
+++ b/pkgs/tools/filesystems/irods/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, bzip2, zlib, autoconf, automake, cmake, gnumake, help2man , texinfo, libtool , cppzmq , libarchive, avro-cpp_llvm, boost, jansson, zeromq, openssl , pam, libiodbc, kerberos, gcc, libcxx, which }:
+{ stdenv, fetchFromGitHub, bzip2, zlib, autoconf, automake, cmake, gnumake, help2man , texinfo, libtool , cppzmq , libarchive, avro-cpp_llvm, boost, jansson, zeromq, openssl , pam, libiodbc, kerberos, gcc, libcxx, which, catch2 }:
 
 with stdenv;
 
@@ -10,19 +10,21 @@ let
     inherit stdenv bzip2 zlib autoconf automake cmake gnumake
             help2man texinfo libtool cppzmq libarchive jansson
             zeromq openssl pam libiodbc kerberos gcc libcxx
-            boost avro-cpp which;
+            boost avro-cpp which catch2;
   };
 in rec {
 
   # irods: libs and server package
   irods = stdenv.mkDerivation (common // rec {
-    version = "4.2.2";
-    prefix = "irods";
-    name = "${prefix}-${version}";
-
-    src = fetchurl {
-      url = "https://github.com/irods/irods/releases/download/${version}/irods-${version}.tar.gz";
-      sha256 = "0b89hs7sizwrs2ja7jl521byiwb58g297p0p7zg5frxmv4ig8dw7";
+    version = "4.2.7";
+    pname = "irods";
+
+    src = fetchFromGitHub {
+      owner = "irods";
+      repo = "irods";
+      rev = version;
+      sha256 = "1pd4l42z4igzf0l8xbp7yz0nhzsv47ziv5qj8q1hh6pfhmwlzp9s";
+      fetchSubmodules = true;
     };
 
     # Patches:
@@ -41,6 +43,10 @@ in rec {
       substituteInPlace cmake/runtime_library.cmake --replace "DESTINATION usr/lib" "DESTINATION lib"
       substituteInPlace cmake/development_library.cmake --replace "DESTINATION usr/lib" "DESTINATION lib"
       substituteInPlace cmake/development_library.cmake --replace "DESTINATION usr/include" "DESTINATION include"
+      for file in unit_tests/cmake/test_config/*.cmake
+      do
+        substituteInPlace $file --replace "CATCH2}/include" "CATCH2}/include/catch2"
+      done
       export cmakeFlags="$cmakeFlags
         -DCMAKE_EXE_LINKER_FLAGS=-Wl,-rpath,$out/lib
         -DCMAKE_MODULE_LINKER_FLAGS=-Wl,-rpath,$out/lib
@@ -59,13 +65,18 @@ in rec {
 
   # icommands (CLI) package, depends on the irods package
   irods-icommands = stdenv.mkDerivation (common // rec {
-     version = "4.2.2";
-     name = "irods-icommands-${version}";
-     src = fetchurl {
-       url = "https://github.com/irods/irods_client_icommands/archive/${version}.tar.gz";
-       sha256 = "15zcxrx0q5c3rli3snd0b2q4i0hs3zzcrbpnibbhsip855qvs77h";
+     version = "4.2.7";
+     pname = "irods-icommands";
+
+     src = fetchFromGitHub {
+       owner = "irods";
+       repo = "irods_client_icommands";
+       rev = version;
+       sha256 = "08hqrc9iaw0y9rrrcknnl5mzbcrsvqc39pwvm62fipl3vnfqryli";
      };
 
+     patches = [ ./zmqcpp-deprecated-send_recv.patch ];
+
      buildInputs = common.buildInputs ++ [ irods ];
 
      preConfigure = common.preConfigure + ''
@@ -84,7 +95,6 @@ in rec {
        description = common.meta.description + " CLI clients";
        longDescription = common.meta.longDescription + ''
          This package provides the CLI clients, called 'icommands'.'';
-       broken = true;
      };
   });
 }