diff options
Diffstat (limited to 'pkgs/applications')
7 files changed, 192 insertions, 34 deletions
diff --git a/pkgs/applications/misc/yubioath-desktop/default.nix b/pkgs/applications/misc/yubioath-desktop/default.nix index 843bc0c1c23..d7a019c1c41 100644 --- a/pkgs/applications/misc/yubioath-desktop/default.nix +++ b/pkgs/applications/misc/yubioath-desktop/default.nix @@ -44,6 +44,7 @@ mkDerivation rec { cp resources/icons/*.{icns,ico,png,xpm} $out/share/yubioath/icons substituteInPlace $out/share/applications/yubioath-desktop.desktop \ --replace 'Exec=yubioath-desktop' "Exec=$out/bin/yubioath-desktop" \ + --replace 'Icon=yubioath' "Icon=$out/share/yubioath/icons/yubioath.png" ''; meta = with stdenv.lib; { diff --git a/pkgs/applications/networking/flent/default.nix b/pkgs/applications/networking/flent/default.nix index bc0a519a0ee..bbd9a7601ac 100644 --- a/pkgs/applications/networking/flent/default.nix +++ b/pkgs/applications/networking/flent/default.nix @@ -1,30 +1,39 @@ -{ stdenv, buildPythonApplication, fetchFromGitHub, matplotlib, procps, pyqt5 -, sphinx -}: +{ stdenv, buildPythonApplication, fetchPypi, matplotlib, procps, pyqt5, python +, pythonPackages, qt5, sphinx, xvfb_run }: buildPythonApplication rec { pname = "flent"; - version = "1.2.2"; - src = fetchFromGitHub { - owner = "tohojo"; - repo = "flent"; - rev = "v${version}"; - sha256 = "1llcdakk0nk9xlpjjz7mv4a80yq4sjnbqhaqvyj9m6lbcxgssh2r"; + version = "1.3.0"; + src = fetchPypi { + inherit pname version; + sha256 = "099779i0ghjd9ikq77z6m6scnlmk946lw9issrgz8zm7babiw4d7"; }; buildInputs = [ sphinx ]; + nativeBuildInputs = [ qt5.wrapQtAppsHook ]; + propagatedBuildInputs = [ matplotlib procps pyqt5 ]; + checkInputs = [ procps pythonPackages.mock pyqt5 xvfb_run ]; - checkInputs = [ procps ]; + checkPhase = '' + cat >test-runner <<EOF + #!/bin/sh - propagatedBuildInputs = [ - matplotlib - procps - pyqt5 - ]; + ${python.pythonForBuild.interpreter} nix_run_setup test + EOF + chmod +x test-runner + wrapQtApp test-runner --prefix PYTHONPATH : $PYTHONPATH + xvfb-run -s '-screen 0 800x600x24' ./test-runner + ''; + + postInstall = '' + for program in $out/bin/*; do + wrapQtApp $program --prefix PYTHONPATH : $PYTHONPATH + done + ''; meta = with stdenv.lib; { description = "The FLExible Network Tester"; - homepage = https://flent.org; + homepage = "https://flent.org"; license = licenses.gpl3; maintainers = [ maintainers.mmlb ]; diff --git a/pkgs/applications/networking/instant-messengers/discord/default.nix b/pkgs/applications/networking/instant-messengers/discord/default.nix index 189092a6d5e..1d9d645b0ed 100644 --- a/pkgs/applications/networking/instant-messengers/discord/default.nix +++ b/pkgs/applications/networking/instant-messengers/discord/default.nix @@ -27,10 +27,10 @@ in { pname = "discord-canary"; binaryName = "DiscordCanary"; desktopName = "Discord Canary"; - version = "0.0.93"; + version = "0.0.95"; src = fetchurl { - url = "https://dl-canary.discordapp.net/apps/linux/0.0.93/discord-canary-0.0.93.tar.gz"; - sha256 = "1jzm5fm7a1p68ims7bv5am0bpbvrhbynzblpj9qrzzrwakdaywbi"; + url = "https://dl-canary.discordapp.net/apps/linux/0.0.95/discord-canary-0.0.95.tar.gz"; + sha256 = "06qhm73kc88pq0lgbi7qjy4gx9ighkmx128fdm1dpzfv62fjdasw"; }; }; }.${branch} diff --git a/pkgs/applications/networking/remote/x2goserver/default.nix b/pkgs/applications/networking/remote/x2goserver/default.nix new file mode 100644 index 00000000000..f69d2326217 --- /dev/null +++ b/pkgs/applications/networking/remote/x2goserver/default.nix @@ -0,0 +1,93 @@ +{ stdenv, lib, fetchurl, perlPackages, makeWrapper, perl, which, nx-libs +, utillinux, coreutils, glibc, gawk, gnused, gnugrep, findutils, xorg +, nettools, iproute, bc, procps, psmisc, lsof, pwgen, openssh, sshfs, bash +}: + +let + pname = "x2goserver"; + version = "4.1.0.3"; + + src = fetchurl { + url = "http://code.x2go.org/releases/source/x2goserver/${pname}-${version}.tar.gz"; + sha256 = "1l6wd708kbipib4ldprfiihqmj4895nifg0bkws4x97majislxk7"; + }; + + x2go-perl = perlPackages.buildPerlPackage rec { + pname = "X2Go"; + inherit version src; + makeFlags = [ "-f" "Makefile.perl" ]; + patchPhase = '' + substituteInPlace X2Go/Config.pm --replace '/etc/x2go' '/var/lib/x2go/conf' + substituteInPlace X2Go/Server/DB.pm \ + --replace '$x2go_lib_path/libx2go-server-db-sqlite3-wrapper' \ + '/run/wrappers/bin/x2gosqliteWrapper' + substituteInPlace X2Go/Server/DB/SQLite3.pm --replace "user='x2gouser'" "user='x2go'" + ''; + }; + + perlEnv = perl.withPackages (p: with p; [ + x2go-perl DBI DBDSQLite FileBaseDir TryTiny CaptureTiny ConfigSimple Switch + ]); + + binaryDeps = [ + perlEnv which nx-libs utillinux coreutils glibc.bin gawk gnused gnugrep + findutils nettools iproute bc procps psmisc lsof pwgen openssh sshfs + xorg.xauth xorg.xinit xorg.xrandr xorg.xmodmap xorg.xwininfo xorg.fontutil + xorg.xkbcomp xorg.setxkbmap + ]; +in +stdenv.mkDerivation rec { + inherit pname version src; + + buildInputs = [ perlEnv bash ]; + + nativeBuildInputs = [ makeWrapper ]; + + prePatch = '' + patchShebangs . + sed -i '/Makefile.PL\|Makefile.perl/d' Makefile + for i in */Makefile; do + substituteInPlace "$i" --replace "-o root -g root " "" + done + substituteInPlace libx2go-server-db-perl/Makefile --replace "chmod 2755" "chmod 755" + for i in x2goserver/sbin/x2godbadmin x2goserver/bin/x2go* + do + substituteInPlace $i --replace '/etc/x2go' '/var/lib/x2go/conf' + done + substituteInPlace x2goserver/sbin/x2gocleansessions \ + --replace '/var/run/x2goserver.pid' '/var/run/x2go/x2goserver.pid' + substituteInPlace x2goserver/sbin/x2godbadmin --replace 'user="x2gouser"' 'user="x2go"' + substituteInPlace x2goserver-xsession/etc/Xsession \ + --replace "SSH_AGENT /bin/bash -c" "SSH_AGENT ${bash}/bin/bash -c" \ + --replace "[ -f /etc/redhat-release ]" "[ -d /etc/nix ] || [ -f /etc/redhat-release ]" + ''; + + makeFlags = [ "PREFIX=/" "NXLIBDIR=${nx-libs}/lib/nx" ]; + + installFlags = [ "DESTDIR=$(out)" ]; + + postInstall = '' + mv $out/etc/x2go/x2goserver.conf{,.example} + mv $out/etc/x2go/x2goagent.options{,.example} + ln -sf ${nx-libs}/bin/nxagent $out/bin/x2goagent + for i in $out/sbin/x2go* $(find $out/bin -type f) \ + $(ls $out/lib/x2go/x2go* | grep -v x2gocheckport) + do + wrapProgram $i --prefix PATH : ${lib.makeBinPath binaryDeps}:$out + done + # We're patching @INC of the setgid wrapper, because we can't mix + # the perl wrapper (for PERL5LIB) with security.wrappers (for setgid) + sed -ie "s,.\+bin/perl,#!${perl}/bin/perl -I ${perlEnv}/lib/perl5/site_perl," \ + $out/lib/x2go/libx2go-server-db-sqlite3-wrapper.pl + ''; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "Remote desktop application, server component"; + homepage = "http://x2go.org/"; + platforms = stdenv.lib.platforms.linux; + license = licenses.gpl2; + maintainers = [ maintainers.averelld ]; + }; +} diff --git a/pkgs/applications/science/biology/trimal/default.nix b/pkgs/applications/science/biology/trimal/default.nix new file mode 100755 index 00000000000..d4e8fee7bc3 --- /dev/null +++ b/pkgs/applications/science/biology/trimal/default.nix @@ -0,0 +1,31 @@ +{ stdenv, fetchFromGitHub }: + +stdenv.mkDerivation rec { + pname = "trimal"; + version = "1.4.1"; + + src = fetchFromGitHub { + repo = pname; + owner = "scapella"; + rev = "v${version}"; + sha256 = "0isc7s3514di4z953xq53ncjkbi650sh4q9yyw5aag1n9hqnh7k0"; + }; + + postUnpack = '' + sourceRoot=''${sourceRoot}/source + echo Source root reset to ''${sourceRoot} + ''; + + installPhase = '' + mkdir -p $out/bin + cp -a trimal readal statal $out/bin + ''; + + meta = with stdenv.lib; { + description = "A tool for the automated removal of spurious sequences or poorly aligned regions from a multiple sequence alignment"; + license = licenses.gpl3; + platforms = platforms.linux; + homepage = http://trimal.cgenomics.org; + maintainers = [ maintainers.bzizou ]; + }; +} diff --git a/pkgs/applications/science/math/pari/default.nix b/pkgs/applications/science/math/pari/default.nix index 72827112c50..89ae354e7c7 100644 --- a/pkgs/applications/science/math/pari/default.nix +++ b/pkgs/applications/science/math/pari/default.nix @@ -1,6 +1,5 @@ { stdenv , fetchurl -, fetchpatch , gmp , readline , libX11 @@ -13,25 +12,13 @@ assert withThread -> libpthreadstubs != null; stdenv.mkDerivation rec { pname = "pari"; - version = "2.11.1"; + version = "2.11.2"; src = fetchurl { url = "https://pari.math.u-bordeaux.fr/pub/pari/unix/${pname}-${version}.tar.gz"; - sha256 = "1jfax92jpydjd02fwl30r6b8kfzqqd6sm4yx94gidyz9lqjb7a94"; + sha256 = "0fck8ssmirl8fy7s4mspgrxjs5sag76xbshqlqzkcl3kqyrk4raa"; }; - patches = [ - # Fix a off-by-one bug that can potentially lead to segfaults (accepted upstream) - # https://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?bug=2117 - # https://trac.sagemath.org/ticket/27335 - (fetchpatch { - name = "fix-off-by-one-error.patch"; - # only relevant parts of https://pari.math.u-bordeaux.fr/cgi-bin/gitweb.cgi?p=pari.git;a=patch;h=aa1ee6e0898d177e6bcf49237d82c804bc410985 - url = "https://git.sagemath.org/sage.git/plain/build/pkgs/pari/patches/red_montgomery.patch?id=bbea55c96e1f05302b3c7f593cf64492497047c5"; - sha256 = "0vqkmhgv9splsdswp6zjnkj50z76rc1m6k9iy3cf9dxwqw3h3nr6"; - }) - ]; - buildInputs = [ gmp readline diff --git a/pkgs/applications/science/misc/colmap/default.nix b/pkgs/applications/science/misc/colmap/default.nix new file mode 100644 index 00000000000..672569ed100 --- /dev/null +++ b/pkgs/applications/science/misc/colmap/default.nix @@ -0,0 +1,37 @@ +{ mkDerivation, lib, fetchFromGitHub, cmake, boost, ceres-solver, eigen, + freeimage, glog, libGLU, glew, qtbase, + cudaSupport ? false, cudatoolkit ? null }: + +assert !cudaSupport || cudatoolkit != null; + +let boost_static = boost.override { enableStatic = true; }; +in +mkDerivation rec { + version = "3.5"; + pname = "colmap"; + src = fetchFromGitHub { + owner = "colmap"; + repo = "colmap"; + rev = version; + sha256 = "1vnb62p0y2bnga173wmjs0lnyqdjikv0fkcxjzxm8187khk2lly8"; + }; + + buildInputs = [ + boost_static ceres-solver eigen + freeimage glog libGLU glew qtbase + ] ++ lib.optional cudaSupport cudatoolkit; + + nativeBuildInputs = [ cmake ]; + + meta = with lib; { + description = "COLMAP - Structure-From-Motion and Multi-View Stereo pipeline"; + longDescription = '' + COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline + with a graphical and command-line interface. + ''; + homepage = https://colmap.github.io/index.html; + license = licenses.bsd2; + platforms = platforms.linux; + maintainers = with maintainers; [ lebastr ]; + }; +} |