12 files changed, 139 insertions, 106 deletions
diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix
index d27c9c9af65..07e0a62b901 100644
--- a/pkgs/applications/misc/calibre/default.nix
+++ b/pkgs/applications/misc/calibre/default.nix
@@ -1,6 +1,7 @@
 { lib
 , mkDerivation
 , fetchurl
+, fetchFromGitHub
 , poppler_utils
 , pkg-config
 , libpng
@@ -94,7 +95,15 @@ mkDerivation rec {
       python
       regex
       sip
-      zeroconf
+      (zeroconf.overrideAttrs (oldAttrs: rec {
+        version = "0.31.0";
+        src = fetchFromGitHub {
+          owner = "jstasiak";
+          repo = "python-zeroconf";
+          rev = version;
+          sha256 = "158dqay74zvnz6kmpvip4ml0kw59nf2aaajwgaamx0zc8ci1p5pj";
+        };
+      }))
       # the following are distributed with calibre, but we use upstream instead
       odfpy
     ] ++ lib.optional (unrarSupport) unrardll
diff --git a/pkgs/applications/misc/coregarage/default.nix b/pkgs/applications/misc/coregarage/default.nix
new file mode 100644
index 00000000000..6d665479764
--- /dev/null
+++ b/pkgs/applications/misc/coregarage/default.nix
@@ -0,0 +1,33 @@
+{ mkDerivation, lib, fetchFromGitLab, qtbase, libarchive, libarchive-qt, libcprime, cmake, ninja }:
+
+mkDerivation rec {
+  pname = "coregarage";
+  version = "4.2.0";
+
+  src = fetchFromGitLab {
+    owner = "cubocore/coreapps";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "sha256-2pOQwSj+QKwpHVJp7VCyq6QpVW5wLUf/BE7ReXrJ78s=";
+  };
+
+  nativeBuildInputs = [
+    cmake
+    ninja
+  ];
+
+  buildInputs = [
+    qtbase
+    libcprime
+    libarchive
+    libarchive-qt
+  ];
+
+  meta = with lib; {
+    description = "A settings manager for the C Suite";
+    homepage = "https://gitlab.com/cubocore/coreapps/coregarage";
+    license = licenses.gpl3Plus;
+    maintainers = with maintainers; [ dan4ik605743 ];
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/applications/networking/mailreaders/notmuch-bower/default.nix b/pkgs/applications/networking/mailreaders/notmuch-bower/default.nix
index 2e2b7da9a4c..feca7bd2018 100644
--- a/pkgs/applications/networking/mailreaders/notmuch-bower/default.nix
+++ b/pkgs/applications/networking/mailreaders/notmuch-bower/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "notmuch-bower";
-  version = "0.12";
+  version = "0.13";
 
   src = fetchFromGitHub {
     owner = "wangp";
     repo = "bower";
     rev = version;
-    sha256 = "0hvvlbvad6h73iiyn9xshlj073p2ddchgh0pyizh9gi8niir4fn5";
+    sha256 = "0r5s16pc3ym5nd33lv9ljv1p1gpb7yysrdni4g7w7yvjrnwk35l6";
   };
 
   nativeBuildInputs = [ gawk mercury pandoc ];
@@ -18,10 +18,12 @@ stdenv.mkDerivation rec {
   makeFlags = [ "PARALLEL=-j$(NIX_BUILD_CORES)" "bower" "man" ];
 
   installPhase = ''
+    runHook preInstall
     mkdir -p $out/bin
     mv bower $out/bin/
     mkdir -p $out/share/man/man1
     mv bower.1 $out/share/man/man1/
+    runHook postInstall
   '';
 
   enableParallelBuilding = true;
@@ -29,8 +31,8 @@ stdenv.mkDerivation rec {
   meta = with lib; {
     homepage = "https://github.com/wangp/bower";
     description = "A curses terminal client for the Notmuch email system";
-    maintainers = with maintainers; [ erictapen ];
-    license = licenses.gpl3;
+    maintainers = with maintainers; [ jgart ];
+    license = licenses.gpl3Plus;
     platforms = platforms.linux;
   };
 }
diff --git a/pkgs/applications/office/gnucash/default.nix b/pkgs/applications/office/gnucash/default.nix
index d2251da7007..c9390e70d25 100644
--- a/pkgs/applications/office/gnucash/default.nix
+++ b/pkgs/applications/office/gnucash/default.nix
@@ -11,7 +11,8 @@ let
     name = perl.name + "-wrapper-for-gnucash";
     nativeBuildInputs = [ makeWrapper ];
     buildInputs = [ perl ] ++ (with perlPackages; [ FinanceQuote DateManip ]);
-    phases = [ "installPhase" ];
+    dontUnpack = true;
+
     installPhase = ''
       mkdir -p $out/bin
       for script in ${perl}/bin/*; do
@@ -40,10 +41,10 @@ stdenv.mkDerivation rec {
     })
   ];
 
-  nativeBuildInputs = [ pkg-config makeWrapper cmake gtest ];
+  nativeBuildInputs = [ pkg-config makeWrapper cmake gtest swig ];
 
   buildInputs = [
-    boost icu libxml2 libxslt gettext swig isocodes gtk3 glibcLocales
+    boost icu libxml2 libxslt gettext isocodes gtk3 glibcLocales
     webkitgtk dconf libofx aqbanking gwenhywfar libdbi
     libdbiDrivers guile
     perlWrapper perl
diff --git a/pkgs/applications/office/portfolio/default.nix b/pkgs/applications/office/portfolio/default.nix
index eb2c0b0f1e7..db3c15454bb 100644
--- a/pkgs/applications/office/portfolio/default.nix
+++ b/pkgs/applications/office/portfolio/default.nix
@@ -24,11 +24,11 @@ let
 in
 stdenv.mkDerivation rec {
   pname = "PortfolioPerformance";
-  version = "0.53.1";
+  version = "0.54.1";
 
   src = fetchurl {
     url = "https://github.com/buchen/portfolio/releases/download/${version}/PortfolioPerformance-${version}-linux.gtk.x86_64.tar.gz";
-    sha256 = "0hddq1nijxhr6kgf7gydw0nh07lh86fs8srkhm29ik4hmv8ch19p";
+    sha256 = "16sv938sdbs01byqwngrfqmzb81zfhvk72ar53l68cg8qjvzs5ml";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/applications/science/biology/mrbayes/builder.sh b/pkgs/applications/science/biology/mrbayes/builder.sh
deleted file mode 100644
index 5b3a54946fc..00000000000
--- a/pkgs/applications/science/biology/mrbayes/builder.sh
+++ /dev/null
@@ -1,9 +0,0 @@
-# builder for mrbayes - note: only builds on Unix
-
-source $stdenv/setup
-
-tar xvfz $src
-cd mrbayes-*
-make
-mkdir -p $out/bin
-cp -v mb $out/bin
diff --git a/pkgs/applications/science/biology/mrbayes/default.nix b/pkgs/applications/science/biology/mrbayes/default.nix
index 9acfea1a146..a9eb099780c 100644
--- a/pkgs/applications/science/biology/mrbayes/default.nix
+++ b/pkgs/applications/science/biology/mrbayes/default.nix
@@ -1,18 +1,18 @@
-{lib, stdenv, fetchurl, readline}:
+{ lib, stdenv, fetchFromGitHub, readline }:
 
 stdenv.mkDerivation rec {
-  # FIXME: replace Makefile so we can build MPI & MAC support
+  pname = "mrbayes";
+  version = "3.2.7";
 
-  name = "mrbayes-3.1.2";
-  src = fetchurl {
-    url = "mirror://sourceforge/mrbayes/${name}.tar.gz";
-    sha256 = "1x7j8ca5wjrqrxmcpvd375ydm3s2pbkzykv8xfhg1jc037g560n6";
+  src = fetchFromGitHub {
+    owner = "NBISweden";
+    repo = "MrBayes";
+    rev = "v${version}";
+    sha256 = "sha256-J0r4CxxQuZ3exvfCMRbLmyEd8ROaXNQG4afwiAs6H+M=";
   };
-  builder = ./builder.sh;
-  buildInputs = [readline];
 
   meta = with lib; {
-    description     = "Bayesian Inference of Phylogeny";
+    description = "Bayesian Inference of Phylogeny";
     longDescription = ''
       Bayesian inference of phylogeny is based upon a
       quantity called the posterior probability distribution of trees, which is
@@ -22,8 +22,9 @@ stdenv.mkDerivation rec {
       MrBayes uses a simulation technique called Markov chain Monte Carlo (or
       MCMC) to approximate the posterior probabilities of trees.
     '';
-    license     = licenses.gpl2;
-    homepage    = "http://mrbayes.csit.fsu.edu/";
+    maintainers = with maintainers; [ ];
+    license = licenses.gpl2Plus;
+    homepage = "https://nbisweden.github.io/MrBayes/";
     platforms = platforms.linux;
   };
 }
diff --git a/pkgs/applications/video/ccextractor/default.nix b/pkgs/applications/video/ccextractor/default.nix
index b559a85d44c..d18ca43cbf7 100644
--- a/pkgs/applications/video/ccextractor/default.nix
+++ b/pkgs/applications/video/ccextractor/default.nix
@@ -4,13 +4,13 @@
 with lib;
 stdenv.mkDerivation rec {
   pname = "ccextractor";
-  version = "0.90";
+  version = "0.91";
 
   src = fetchFromGitHub {
     owner = "CCExtractor";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-NVFCwUZZVt8GrWXWyvoF8UrUZ/ix+GWubKtc3218k7o=";
+    sha256 = "sha256-VqJQaYzH8psQJfnDariV4q7SkDiXRz9byR51C8DzVEs=";
   };
 
   sourceRoot = "source/src";
diff --git a/pkgs/applications/video/vlc/default.nix b/pkgs/applications/video/vlc/default.nix
index 6098aeba051..7aee50d5064 100644
--- a/pkgs/applications/video/vlc/default.nix
+++ b/pkgs/applications/video/vlc/default.nix
@@ -8,6 +8,7 @@
 , libmtp, unzip, taglib, libkate, libtiger, libv4l, samba, libssh2, liboggz
 , libass, libva, libdvbpsi, libdc1394, libraw1394, libopus
 , libvdpau, libsamplerate, live555, fluidsynth, wayland, wayland-protocols
+, ncurses
 , onlyLibVLC ? false
 , withQt5 ? true, qtbase, qtsvg, qtx11extras, wrapQtAppsHook
 , jackSupport ? false
@@ -42,7 +43,7 @@ stdenv.mkDerivation rec {
     libkate libtiger libv4l samba libssh2 liboggz libass libdvbpsi libva
     xorg.xlibsWrapper xorg.libXv xorg.libXvMC xorg.libXpm xorg.xcbutilkeysyms
     libdc1394 libraw1394 libopus libebml libmatroska libvdpau libsamplerate
-    fluidsynth wayland wayland-protocols
+    fluidsynth wayland wayland-protocols ncurses
   ] ++ optional (!stdenv.hostPlatform.isAarch64) live555
     ++ optionals withQt5    [ qtbase qtsvg qtx11extras ]
     ++ optionals skins2Support (with xorg; [ libXpm freetype libXext libXinerama ])
diff --git a/pkgs/applications/virtualization/8086tiny/builder.sh b/pkgs/applications/virtualization/8086tiny/builder.sh
deleted file mode 100644
index 210f11e1328..00000000000
--- a/pkgs/applications/virtualization/8086tiny/builder.sh
+++ /dev/null
@@ -1,30 +0,0 @@
-
-source $stdenv/setup
-
-unpackPhase
-cd $sourceRoot
-
-make 8086tiny
-
-if [ $bios ]; then
-    cd bios_source
-    nasm -f bin bios.asm -o bios
-    cd ..
-fi
-
-mkdir -p $out/bin $out/share/$name $out/share/doc/$name/images
-
-install -m 755 8086tiny $out/bin
-install -m 644 fd.img $out/share/$name/8086tiny-floppy.img
-install -m 644 bios_source/bios.asm  $out/share/$name/8086tiny-bios-src.asm
-install -m 644 docs/8086tiny.css  $out/share/doc/$name
-install -m 644 docs/doc.html  $out/share/doc/$name
-for i in docs/images/*.gif
-do
-    install -m 644 $i $out/share/doc/$name/images
-done
-if [ $bios ]; then
-    install -m 644 bios_source/bios $out/share/$name/8086tiny-bios
-else
-    install -m 644 bios $out/share/$name/8086tiny-bios
-fi
diff --git a/pkgs/applications/virtualization/8086tiny/default.nix b/pkgs/applications/virtualization/8086tiny/default.nix
deleted file mode 100644
index c58d488f583..00000000000
--- a/pkgs/applications/virtualization/8086tiny/default.nix
+++ /dev/null
@@ -1,43 +0,0 @@
-{ lib, stdenv, fetchFromGitHub
-, localBios ? true, nasm ? null
-, sdlSupport ? true, SDL ? null }:
-
-assert sdlSupport -> (SDL != null);
-
-stdenv.mkDerivation rec {
-
-  pname = "8086tiny";
-  version = "1.25";
-
-  src = fetchFromGitHub {
-    owner = "adriancable";
-    repo = pname;
-    rev = "c79ca2a34d96931d55ef724c815b289d0767ae3a";
-    sha256 = "00aydg8f28sgy8l3rd2a7jvp56lx3b63hhak43p7g7vjdikv495w";
-  };
-
-  buildInputs = with lib;
-  optionals localBios [ nasm ]
-  ++  optionals sdlSupport [ SDL ];
-
-  bios = localBios;
-
-  builder = ./builder.sh;
-
-  meta = with lib; {
-    description = "An open-source small 8086 emulator";
-    longDescription = ''
-      8086tiny is a tiny, open-source (MIT), portable (little-endian hosts)
-      Intel PC emulator, powerful enough to run DOS, Windows 3.0, Excel, MS
-      Flight Simulator, AutoCAD, Lotus 1-2-3, and similar applications. 8086tiny
-      emulates a "late 80's era" PC XT-type machine.
-
-      8086tiny is based on an IOCCC 2013 winning entry. In fact that is the
-      "unobfuscated" version :)
-    '';
-    homepage = "https://github.com/adriancable/8086tiny";
-    license = licenses.mit;
-    maintainers = [ maintainers.AndersonTorres ];
-    platforms = platforms.linux;
-  };
-}
diff --git a/pkgs/applications/virtualization/tiny8086/default.nix b/pkgs/applications/virtualization/tiny8086/default.nix
new file mode 100644
index 00000000000..60d69432cde
--- /dev/null
+++ b/pkgs/applications/virtualization/tiny8086/default.nix
@@ -0,0 +1,68 @@
+{ lib
+, stdenv
+, fetchFromGitHub
+, localBios ? true
+, nasm
+, sdlSupport ? true
+, SDL
+}:
+
+stdenv.mkDerivation rec {
+  pname = "8086tiny";
+  version = "1.25";
+
+  src = fetchFromGitHub {
+    owner = "adriancable";
+    repo = pname;
+    rev = "c79ca2a34d96931d55ef724c815b289d0767ae3a";
+    sha256 = "00aydg8f28sgy8l3rd2a7jvp56lx3b63hhak43p7g7vjdikv495w";
+  };
+
+  buildInputs = lib.optional localBios nasm
+    ++ lib.optional sdlSupport SDL;
+
+  makeFlags = [ "8086tiny" ];
+
+  postBuild = lib.optionalString localBios ''
+    (
+      cd bios_source
+      nasm -f bin bios.asm -o bios
+    )
+  '';
+
+  installPhase = ''
+    mkdir -p $out/bin $out/share/8086tiny $out/share/doc/8086tiny/images
+
+    install -m 755 8086tiny $out/bin
+    install -m 644 fd.img $out/share/8086tiny/8086tiny-floppy.img
+    install -m 644 bios_source/bios.asm $out/share/8086tiny/8086tiny-bios-src.asm
+    install -m 644 docs/8086tiny.css $out/share/doc/8086tiny
+    install -m 644 docs/doc.html $out/share/doc/$name
+
+    for i in docs/images/\*.gif; do
+      install -m 644 $i $out/share/doc/8086tiny/images
+    done
+
+    ${if localBios then
+      "install -m 644 bios_source/bios $out/share/8086tiny/8086tiny-bios"
+    else
+      "install -m 644 bios $out/share/8086tiny/8086tiny-bios"}
+  '';
+
+  meta = with lib; {
+    description = "An open-source small 8086 emulator";
+    longDescription = ''
+      8086tiny is a tiny, open-source (MIT), portable (little-endian hosts)
+      Intel PC emulator, powerful enough to run DOS, Windows 3.0, Excel, MS
+      Flight Simulator, AutoCAD, Lotus 1-2-3, and similar applications. 8086tiny
+      emulates a "late 80's era" PC XT-type machine.
+
+      8086tiny is based on an IOCCC 2013 winning entry. In fact that is the
+      "unobfuscated" version :)
+    '';
+    homepage = "https://github.com/adriancable/8086tiny";
+    license = licenses.mit;
+    maintainers = [ maintainers.AndersonTorres ];
+    platforms = platforms.linux;
+  };
+}