1 files changed, 61 insertions, 0 deletions
diff --git a/pkgs/applications/science/chemistry/jmol/default.nix b/pkgs/applications/science/chemistry/jmol/default.nix
new file mode 100644
index 00000000000..246618d4eaf
--- /dev/null
+++ b/pkgs/applications/science/chemistry/jmol/default.nix
@@ -0,0 +1,61 @@
+{ stdenv
+, lib
+, fetchurl
+, unzip
+, makeDesktopItem
+, jre
+}:
+
+let
+  desktopItem = makeDesktopItem {
+    name = "jmol";
+    exec = "jmol";
+    desktopName = "JMol";
+    genericName = "Molecular Modeler";
+    mimeTypes = [
+      "chemical/x-pdb"
+      "chemical/x-mdl-molfile"
+      "chemical/x-mol2"
+      "chemical/seq-aa-fasta"
+      "chemical/seq-na-fasta"
+      "chemical/x-xyz"
+      "chemical/x-mdl-sdf"
+    ];
+    categories = [ "Graphics" "Education" "Science" "Chemistry" ];
+  };
+in
+stdenv.mkDerivation rec {
+  version = "14.32.33";
+  pname = "jmol";
+
+  src = let
+    baseVersion = "${lib.versions.major version}.${lib.versions.minor version}";
+  in fetchurl {
+    url = "mirror://sourceforge/jmol/Jmol/Version%20${baseVersion}/Jmol%20${version}/Jmol-${version}-binary.tar.gz";
+    sha256 = "sha256-aImV5zgXjsXdRJLrYIomDymXHRhxuOwGYAwpMIr7wak=";
+  };
+
+  patchPhase = ''
+    sed -i -e "4s:.*:command=${jre}/bin/java:" -e "10s:.*:jarpath=$out/share/jmol/Jmol.jar:" -e "11,21d" jmol
+  '';
+
+  installPhase = ''
+    mkdir -p "$out/share/jmol" "$out/bin"
+
+    ${unzip}/bin/unzip jsmol.zip -d "$out/share/"
+
+    cp *.jar jmol.sh "$out/share/jmol"
+    cp -r ${desktopItem}/share/applications $out/share
+    cp jmol $out/bin
+  '';
+
+  enableParallelBuilding = true;
+
+  meta = with lib; {
+     description = "A Java 3D viewer for chemical structures";
+     homepage = "https://sourceforge.net/projects/jmol";
+     license = licenses.lgpl2;
+     platforms = platforms.all;
+     maintainers = with maintainers; [ mounium ] ++ teams.sage.members;
+  };
+}