diff options
Diffstat (limited to 'pkgs/applications/science/biology/truvari/default.nix')
| -rw-r--r-- | pkgs/applications/science/biology/truvari/default.nix | 27 |
1 files changed, 9 insertions, 18 deletions
diff --git a/pkgs/applications/science/biology/truvari/default.nix b/pkgs/applications/science/biology/truvari/default.nix index e626af56278..946f4be6063 100644 --- a/pkgs/applications/science/biology/truvari/default.nix +++ b/pkgs/applications/science/biology/truvari/default.nix @@ -1,6 +1,5 @@ { lib , fetchFromGitHub -, fetchpatch , python3Packages , runtimeShell , bcftools @@ -16,37 +15,28 @@ let }; in python3Packages.buildPythonApplication rec { pname = "truvari"; - version = "4.0.0"; + version = "4.1.0"; + pyproject = true; src = fetchFromGitHub { owner = "ACEnglish"; repo = "truvari"; rev = "v${version}"; - hash = "sha256-UJNMKEV5m2jFqnWvkVAtymkcE2TjPIXp7JqRZpMSqsE="; + hash = "sha256-HFVAv1TTL/nMjr62tQKhMdwh25P/y4nBGzSbxoJxMmo="; }; - patches = [ - (fetchpatch { - name = "fix-anno-trf-on-darwin.patch"; - url = "https://github.com/ACEnglish/truvari/commit/f9f36305e8eaa88f951562210e3672a4d4f71265.patch"; - hash = "sha256-7O9jTQDCC2b8hUBm0qJQCYMzTC9NFtn/E0dTHSfJALU="; - }) - (fetchpatch { - name = "fix-anno-grm-on-darwin.patch"; - url = "https://github.com/ACEnglish/truvari/commit/31416552008a506204ed4e2add55474f10392357.patch"; - hash = "sha256-42u0ewZU38GCoSfff+XQFv9hEFeO3WlJufTHcl6vkN4="; - }) - ]; - postPatch = '' - substituteInPlace setup.py \ - --replace "rich==" "rich>=" substituteInPlace truvari/utils.py \ --replace "/bin/bash" "${runtimeShell}" patchShebangs repo_utils/test_files ''; + nativeBuildInputs = [ + python3Packages.setuptools + ]; + propagatedBuildInputs = with python3Packages; [ + pywfa rich edlib pysam @@ -83,6 +73,7 @@ in python3Packages.buildPythonApplication rec { meta = with lib; { description = "Structural variant comparison tool for VCFs"; homepage = "https://github.com/ACEnglish/truvari"; + changelog = "https://github.com/ACEnglish/truvari/releases/tag/${src.rev}"; license = licenses.mit; maintainers = with maintainers; [ natsukium scalavision ]; longDescription = '' |