1 files changed, 34 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/samtools/samtools_0_1_19.nix b/pkgs/applications/science/biology/samtools/samtools_0_1_19.nix
new file mode 100644
index 00000000000..a811bc4412f
--- /dev/null
+++ b/pkgs/applications/science/biology/samtools/samtools_0_1_19.nix
@@ -0,0 +1,34 @@
+{ stdenv, fetchurl, zlib }:
+
+stdenv.mkDerivation rec {
+  name = "${pname}-${version}";
+  pname = "samtools";
+  version = "0.1.19";
+
+  src = fetchurl {
+    url = "mirror://sourceforge/samtools/${name}.tar.bz2";
+    sha256 = "d080c9d356e5f0ad334007e4461cbcee3c4ca97b8a7a5a48c44883cf9dee63d4";
+  };
+
+  patches = [
+    ./samtools-0.1.19-no-curses.patch
+  ];
+
+  buildInputs = [ zlib ];
+
+  installPhase = ''
+    mkdir -p $out/bin
+    mkdir -p $out/share/man
+
+    cp samtools $out/bin
+    cp samtools.1 $out/share/man
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Tools for manipulating SAM/BAM/CRAM format";
+    license = licenses.mit;
+    homepage = http://samtools.sourceforge.net/;
+    platforms = platforms.unix;
+    maintainers = [ maintainers.unode ];
+  };
+}