diff options
Diffstat (limited to 'pkgs/applications/science/biology/igv/default.nix')
| -rw-r--r-- | pkgs/applications/science/biology/igv/default.nix | 22 |
1 files changed, 12 insertions, 10 deletions
diff --git a/pkgs/applications/science/biology/igv/default.nix b/pkgs/applications/science/biology/igv/default.nix index aa6c95071b7..bc4f1677fc9 100644 --- a/pkgs/applications/science/biology/igv/default.nix +++ b/pkgs/applications/science/biology/igv/default.nix @@ -1,32 +1,34 @@ -{ stdenv, fetchurl, unzip, jre }: +{ stdenv, fetchzip, jdk11 }: stdenv.mkDerivation rec { pname = "igv"; - version = "2.4.19"; - - src = fetchurl { - url = "https://data.broadinstitute.org/igv/projects/downloads/2.4/IGV_${version}.zip"; - sha256 = "048dgrhxcb854d24kyjkqz12bw04bsv49i5jawb75yzkswwfkb0z"; + version = "2.8.9"; + src = fetchzip { + url = "https://data.broadinstitute.org/igv/projects/downloads/2.8/IGV_${version}.zip"; + sha256 = "1874w1xprv91caz1ymfxilq6inhj36xzx8j9m0mcyp0qfvfvyjp7"; }; - buildInputs = [ unzip jre ]; - installPhase = '' mkdir -pv $out/{share,bin} cp -Rv * $out/share/ sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh - sed -i 's#java#${jre}/bin/java#g' $out/share/igv.sh + sed -i 's#java#${jdk11}/bin/java#g' $out/share/igv.sh + + sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools + sed -i 's#java#${jdk11}/bin/java#g' $out/share/igvtools ln -s $out/share/igv.sh $out/bin/igv + ln -s $out/share/igvtools $out/bin/igvtools chmod +x $out/bin/igv + chmod +x $out/bin/igvtools ''; meta = with stdenv.lib; { homepage = "https://www.broadinstitute.org/igv/"; description = "A visualization tool for interactive exploration of genomic datasets"; - license = licenses.lgpl21; + license = licenses.mit; platforms = platforms.unix; maintainers = [ maintainers.mimame ]; }; |