diff options
Diffstat (limited to 'pkgs/applications/science/biology/delly/default.nix')
-rw-r--r-- | pkgs/applications/science/biology/delly/default.nix | 17 |
1 files changed, 13 insertions, 4 deletions
diff --git a/pkgs/applications/science/biology/delly/default.nix b/pkgs/applications/science/biology/delly/default.nix index bfdf5a1bb17..a6c45f8aa44 100644 --- a/pkgs/applications/science/biology/delly/default.nix +++ b/pkgs/applications/science/biology/delly/default.nix @@ -1,16 +1,25 @@ -{ stdenv, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }: +{ stdenv, fetchpatch, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }: -stdenv.mkDerivation rec { +let + htslibPatch = fetchpatch { + url = "https://github.com/dellytools/delly/commit/0e5c710b0c5ea790bb39699d4cbd49cf4fb86f14.diff"; + sha256 = "09bz1qqvzhdzm99hf9zgrv80kq9jlr1m2mdvx96p2hk5lpnbdl7y"; + excludes = [ "src/htslib" ]; + }; + +in stdenv.mkDerivation rec { pname = "delly"; - version = "0.8.1"; + version = "0.8.2"; src = fetchFromGitHub { owner = "dellytools"; repo = pname; rev = "v${version}"; - sha256 = "18gm86j1g1k4z1cjv2m5v9rsl1xqs2w3dhwcsnzx2mhkrvmlc4i1"; + sha256 = "14bkmixz7737xj192ww96s3a20zc7xs7r04db8avw3ggi3i1s1cs"; }; + patches = [ htslibPatch ]; + buildInputs = [ zlib htslib bzip2 lzma ncurses boost ]; EBROOTHTSLIB = htslib; |