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Diffstat (limited to 'doc/languages-frameworks/r.section.md')
| -rw-r--r-- | doc/languages-frameworks/r.section.md | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/doc/languages-frameworks/r.section.md b/doc/languages-frameworks/r.section.md index c420d112c91..56e3da64df2 100644 --- a/doc/languages-frameworks/r.section.md +++ b/doc/languages-frameworks/r.section.md @@ -1,6 +1,6 @@ # R {#r} -## Installation +## Installation {#installation} Define an environment for R that contains all the libraries that you'd like to use by adding the following snippet to your $HOME/.config/nixpkgs/config.nix file: @@ -31,6 +31,7 @@ output is the name that has to be passed to rWrapper in the code snipped above. However, if you'd like to add a file to your project source to make the environment available for other contributors, you can create a `default.nix` file like so: + ```nix with import <nixpkgs> {}; { @@ -50,7 +51,7 @@ with import <nixpkgs> {}; and then run `nix-shell .` to be dropped into a shell with those packages available. -## RStudio +## RStudio {#rstudio} RStudio uses a standard set of packages and ignores any custom R environments or installed packages you may have. To create a custom @@ -93,7 +94,7 @@ Executing `nix-shell` will then drop you into an environment equivalent to the one above. If you need additional packages just add them to the list and re-enter the shell. -## Updating the package set +## Updating the package set {#updating-the-package-set} ```bash nix-shell generate-shell.nix @@ -113,8 +114,7 @@ mv bioc-experiment-packages.nix.new bioc-experiment-packages.nix `generate-r-packages.R <repo>` reads `<repo>-packages.nix`, therefor the renaming. - -## Testing if the Nix-expression could be evaluated +## Testing if the Nix-expression could be evaluated {#testing-if-the-nix-expression-could-be-evaluated} ```bash nix-build test-evaluation.nix --dry-run |