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| author | Emery Hemingway <ehmry@posteo.net> | 2023-08-02 14:46:22 +0100 |
|---|---|---|
| committer | Emery Hemingway <ehmry@posteo.net> | 2023-08-21 07:32:46 +0100 |
| commit | ed353dc72116731a20aefeb303f55a0b906c3e0b (patch) | |
| tree | 9730c3cebb1c682710731d8fa88f197ffb74c2a1 /pkgs | |
| parent | 9025a583b1f3e2cf328a02b3f2ac88d187ce047b (diff) | |
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mosdepth: build with Nim-2
Diffstat (limited to 'pkgs')
| -rw-r--r-- | pkgs/applications/science/biology/mosdepth/default.nix | 1 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 2 insertions, 1 deletions
diff --git a/pkgs/applications/science/biology/mosdepth/default.nix b/pkgs/applications/science/biology/mosdepth/default.nix index 3e2188a93d1..b36104bcf76 100644 --- a/pkgs/applications/science/biology/mosdepth/default.nix +++ b/pkgs/applications/science/biology/mosdepth/default.nix @@ -13,6 +13,7 @@ nimPackages.buildNimPackage rec { }; buildInputs = [ docopt hts pcre ]; + nimFlags = hts.nimFlags ++ [ "--threads:off" ]; meta = with lib; { description = "fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing"; diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 61be873a874..8c1e27b4b35 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -38988,7 +38988,7 @@ with pkgs; inherit (llvmPackages) openmp; }; - mosdepth = callPackage ../applications/science/biology/mosdepth { }; + mosdepth = nim2Packages.callPackage ../applications/science/biology/mosdepth { }; niftyreg = callPackage ../applications/science/biology/niftyreg { }; |