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| author | Frederik Rietdijk <freddyrietdijk@fridh.nl> | 2016-11-14 13:32:54 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2016-11-14 13:32:54 +0100 |
| commit | ce7a438156e8a11e7a0188c163112723264476ac (patch) | |
| tree | 5c6c32c94e7db54eaa8143df8daa2cbe9176385c /pkgs | |
| parent | 215a41355b12d016b0f2553a9560626c79ebb94b (diff) | |
| parent | a6d6a3972f22e47d76a286da5369d79f2e002c87 (diff) | |
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Merge pull request #20399 from jbedo/plink-ng
plink-ng: init at 1.90b3
Diffstat (limited to 'pkgs')
| -rw-r--r-- | pkgs/applications/science/biology/plink-ng/default.nix | 34 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 36 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/plink-ng/default.nix b/pkgs/applications/science/biology/plink-ng/default.nix new file mode 100644 index 00000000000..eb4d2714a12 --- /dev/null +++ b/pkgs/applications/science/biology/plink-ng/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchFromGitHub, zlib, openblas, darwin}: + +stdenv.mkDerivation rec { + name = "plink-ng-${version}"; + version = "1.90b3"; + + src = fetchFromGitHub { + owner = "chrchang"; + repo = "plink-ng"; + rev = "v${version}"; + sha256 = "1zhffjbwpd50dxywccbnv1rxy9njwz73l4awc5j7i28rgj3davcq"; + }; + + buildInputs = [ zlib ] ++ (if stdenv.isDarwin then [ darwin.apple_sdk.frameworks.Accelerate ] else [ openblas ]) ; + + buildPhase = '' + sed -i 's|zlib-1.2.8/zlib.h|zlib.h|g' *.c *.h + ${if stdenv.cc.isClang then "sed -i 's|g++|clang++|g' Makefile.std" else ""} + make ZLIB=-lz ${if stdenv.isDarwin then "" else "BLASFLAGS=-lopenblas"} -f Makefile.std + ''; + + installPhase = '' + mkdir -p $out/bin + cp plink $out/bin + ''; + + meta = { + description = "A comprehensive update to the PLINK association analysis toolset"; + homepage = "https://www.cog-genomics.org/plink2"; + license = stdenv.lib.licenses.gpl3; + platforms = stdenv.lib.platforms.all; + }; +} + diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index d8735ffad8f..3ffd389caa1 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -16349,6 +16349,8 @@ in paml = callPackage ../applications/science/biology/paml { }; plink = callPackage ../applications/science/biology/plink/default.nix { }; + + plink-ng = callPackage ../applications/science/biology/plink-ng/default.nix { }; samtools = callPackage ../applications/science/biology/samtools/default.nix { }; |