Merge staging-next into master

Staging next

111 files changed, 254 insertions, 232 deletions

diff --git a/pkgs/development/compilers/go/1.11.nix b/pkgs/development/compilers/go/1.11.nix
index d29e3f3c866..d382bd90e47 100644
--- a/pkgs/development/compilers/go/1.11.nix
+++ b/pkgs/development/compilers/go/1.11.nix
@@ -30,11 +30,11 @@ in
 
 stdenv.mkDerivation rec {
   pname = "go";
-  version = "1.11.10";
+  version = "1.11.11";
 
   src = fetchurl {
     url = "https://dl.google.com/go/go${version}.src.tar.gz";
-    sha256 = "06rw962xigbrxblp942jbh7k133blpxg2xfrxi32qdhxkmmfj9yz";
+    sha256 = "130g5lhg4h5xwa6chvxfi80nvdx8qb26xfbamzgyc8i5xwrprzqz";
   };
 
   # perl is used for testing go vet
diff --git a/pkgs/development/compilers/go/1.12.nix b/pkgs/development/compilers/go/1.12.nix
index cbd36293826..247845b6ad8 100644
--- a/pkgs/development/compilers/go/1.12.nix
+++ b/pkgs/development/compilers/go/1.12.nix
@@ -30,11 +30,11 @@ in
 
 stdenv.mkDerivation rec {
   pname = "go";
-  version = "1.12.5";
+  version = "1.12.6";
 
   src = fetchurl {
     url = "https://dl.google.com/go/go${version}.src.tar.gz";
-    sha256 = "1s034pr60h20lsw171vbzqxqvcqn0s04dxfyqczyfcmkrf4g199a";
+    sha256 = "1jmlj8pygg4hjpkziicihcf76lz61w1qljdpm3hqlqsmfk65qv69";
   };
 
   # perl is used for testing go vet
diff --git a/pkgs/development/libraries/avahi/default.nix b/pkgs/development/libraries/avahi/default.nix
index 28302fbbe32..76010dacc5e 100644
--- a/pkgs/development/libraries/avahi/default.nix
+++ b/pkgs/development/libraries/avahi/default.nix
@@ -50,6 +50,8 @@ stdenv.mkDerivation rec {
     # autoipd won't build on darwin
     ++ stdenv.lib.optional stdenv.isDarwin "--disable-autoipd";
 
+  NIX_CFLAGS_COMPILE = "-DAVAHI_SERVICE_DIR=\"/etc/avahi/services\"";
+
   preBuild = stdenv.lib.optionalString stdenv.isDarwin ''
     sed -i '20 i\
     #define __APPLE_USE_RFC_2292' \
diff --git a/pkgs/development/libraries/libde265/default.nix b/pkgs/development/libraries/libde265/default.nix
index 07823072bad..6c9fabf5cae 100644
--- a/pkgs/development/libraries/libde265/default.nix
+++ b/pkgs/development/libraries/libde265/default.nix
@@ -13,6 +13,8 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
 
+  enableParallelBuilding = true;
+
   meta = {
     homepage = "https://github.com/strukturag/libde265";
     description = "Open h.265 video codec implementation";
diff --git a/pkgs/development/libraries/libwebp/default.nix b/pkgs/development/libraries/libwebp/default.nix
index 14be410bd16..b0457e76f2f 100644
--- a/pkgs/development/libraries/libwebp/default.nix
+++ b/pkgs/development/libraries/libwebp/default.nix
@@ -57,6 +57,8 @@ stdenv.mkDerivation rec {
     ++ optional tiffSupport libtiff
     ++ optional gifSupport giflib;
 
+  enableParallelBuilding = true;
+
   meta = {
     description = "Tools and library for the WebP image format";
     homepage = https://developers.google.com/speed/webp/;
diff --git a/pkgs/development/libraries/p11-kit/default.nix b/pkgs/development/libraries/p11-kit/default.nix
index 0e1be863346..9ca329c6761 100644
--- a/pkgs/development/libraries/p11-kit/default.nix
+++ b/pkgs/development/libraries/p11-kit/default.nix
@@ -4,28 +4,15 @@
 
 stdenv.mkDerivation rec {
   pname = "p11-kit";
-  version = "0.23.15";
+  version = "0.23.16.1";
 
   src = fetchFromGitHub {
     owner = "p11-glue";
     repo = pname;
     rev = version;
-    sha256 = "0kf7zz2cvd6j09qkff3rl3wfisva82ia1z9h8bmy4ifwkv4yl9fv";
+    sha256 = "0jr62qkbqxp3iawgksk1qc3gp8p6x09sg5v7xac80ghyfxil15wy";
   };
 
-  patches = [
-    (fetchpatch {
-      # https://github.com/p11-glue/p11-kit/issues/212
-      url = "https://github.com/p11-glue/p11-kit/commit/2a474e1fe8f4bd8b4ed7622e5cf3b2718a202562.patch";
-      sha256 = "13wi32hpzilvzxn57crn79h88q38jm2fzd5zxj4wnhv9dhwqr6lg";
-    })
-    (fetchpatch {
-      # https://github.com/p11-glue/p11-kit/issues/220
-      url = "https://github.com/p11-glue/p11-kit/commit/e2170b295992cb7fdf115227a78028ac3780619f.patch";
-      sha256 = "0433d8drfxaabsxwkkl4kr0jx8jr2l3a9ar11szipd9jwvrqnyr7";
-    })
-  ];
-
   outputs = [ "out" "dev"];
   outputBin = "dev";
 
diff --git a/pkgs/development/libraries/xgboost/default.nix b/pkgs/development/libraries/xgboost/default.nix
index 37e55afc4e9..74d263a9417 100644
--- a/pkgs/development/libraries/xgboost/default.nix
+++ b/pkgs/development/libraries/xgboost/default.nix
@@ -28,7 +28,7 @@ stdenv.mkDerivation rec {
                ++ lib.optional ncclSupport "-DUSE_NCCL=ON";
 
   installPhase = let
-    libname = if stdenv.isDarwin then "libxgboost.dylib" else "libxgboost.so";
+    libname = "libxgboost${stdenv.hostPlatform.extensions.sharedLibrary}";
   in ''
     mkdir -p $out
     cp -r ../include $out
diff --git a/pkgs/development/python-modules/Cython/default.nix b/pkgs/development/python-modules/Cython/default.nix
index 7562c3e4fd0..3c685e0f34b 100644
--- a/pkgs/development/python-modules/Cython/default.nix
+++ b/pkgs/development/python-modules/Cython/default.nix
@@ -25,11 +25,11 @@ let
 
 in buildPythonPackage rec {
   pname = "Cython";
-  version = "0.29.7";
+  version = "0.29.10";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "55d081162191b7c11c7bfcb7c68e913827dfd5de6ecdbab1b99dab190586c1e8";
+    sha256 = "26229570d6787ff3caa932fe9d802960f51a89239b990d275ae845405ce43857";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/Mako/default.nix b/pkgs/development/python-modules/Mako/default.nix
index e611d660b84..1144ca2a27f 100644
--- a/pkgs/development/python-modules/Mako/default.nix
+++ b/pkgs/development/python-modules/Mako/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "Mako";
-  version = "1.0.9";
+  version = "1.0.10";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0728c404877cd4ca72c409c0ea372dc5f3b53fa1ad2bb434e1d216c0444ff1fd";
+    sha256 = "7165919e78e1feb68b4dbe829871ea9941398178fa58e6beedb9ba14acf63965";
   };
 
   checkInputs = [ markupsafe nose mock pytest_3 ];
diff --git a/pkgs/development/python-modules/Wand/default.nix b/pkgs/development/python-modules/Wand/default.nix
index 0b61f671f83..18e5c80615a 100644
--- a/pkgs/development/python-modules/Wand/default.nix
+++ b/pkgs/development/python-modules/Wand/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "Wand";
-  version = "0.5.3";
+  version = "0.5.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a2c318993791fab4fcfd460045415176f81d42f8c6fd8a88fb8d74d2f0f34b97";
+    sha256 = "e2e08e19a37c61e85eaa307fe319889af46fe4cac6c23e3ae668b96be3e497ff";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/aiohttp-jinja2/default.nix b/pkgs/development/python-modules/aiohttp-jinja2/default.nix
index 78669e70718..37e0211d98d 100644
--- a/pkgs/development/python-modules/aiohttp-jinja2/default.nix
+++ b/pkgs/development/python-modules/aiohttp-jinja2/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "aiohttp-jinja2";
-  version = "1.1.0";
+  version = "1.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "aef9b6595f962182ad00c990095fb51d731c280e1d183e2b28cf0bdb5a942d0c";
+    sha256 = "54630f769b0a25e83744673068db89cdd099f830818cea7ea9c43eb23add7941";
   };
 
   propagatedBuildInputs = [ aiohttp jinja2 ];
diff --git a/pkgs/development/python-modules/alembic/default.nix b/pkgs/development/python-modules/alembic/default.nix
index 429efb8d068..88fd18431d6 100644
--- a/pkgs/development/python-modules/alembic/default.nix
+++ b/pkgs/development/python-modules/alembic/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "alembic";
-  version = "1.0.9";
+  version = "1.0.10";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "40b9a619aa5f25ea1e1508adcda88b33704ef28e02c9cfa6471e5c772ecf0829";
+    sha256 = "828dcaa922155a2b7166c4f36ec45268944e4055c86499bd14319b4c8c0094b7";
   };
 
   buildInputs = [ pytest pytestcov mock coverage ];
diff --git a/pkgs/development/python-modules/altair/default.nix b/pkgs/development/python-modules/altair/default.nix
index f1f2d728ff2..9e3a97c1312 100644
--- a/pkgs/development/python-modules/altair/default.nix
+++ b/pkgs/development/python-modules/altair/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "altair";
-  version = "3.0.0";
+  version = "3.0.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0x4zm1xia6sln8dhwd803jlcii2a62fx3rlnj5vsa8g3anfc2v24";
+    sha256 = "63934563a7a7b7186335858206a0b9be6043163b8b54a26cd3b3299a9e5e391f";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/arrow/default.nix b/pkgs/development/python-modules/arrow/default.nix
index 0a8e7e6f482..e357bef0dfd 100644
--- a/pkgs/development/python-modules/arrow/default.nix
+++ b/pkgs/development/python-modules/arrow/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "arrow";
-  version = "0.13.1";
+  version = "0.13.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6f54d9f016c0b7811fac9fb8c2c7fa7421d80c54dbdd75ffb12913c55db60b8a";
+    sha256 = "82dd5e13b733787d4eb0fef42d1ee1a99136dc1d65178f70373b3678b3181bfc";
   };
 
   checkPhase = ''
diff --git a/pkgs/development/python-modules/audioread/default.nix b/pkgs/development/python-modules/audioread/default.nix
index d4c485e909c..addd187abeb 100644
--- a/pkgs/development/python-modules/audioread/default.nix
+++ b/pkgs/development/python-modules/audioread/default.nix
@@ -1,17 +1,20 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, pytestrunner
 }:
 
 buildPythonPackage rec {
   pname = "audioread";
-  version = "2.1.6";
+  version = "2.1.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b0b9270c20833a75ce0d167fb2fdad52ddcd8e8f300be8afad3ac9715850bc50";
+    sha256 = "073904fabc842881e07bd3e4a5776623535562f70b1655b635d22886168dd168";
   };
 
+  nativeBuildInputs = [ pytestrunner ];
+
   # No tests, need to disable or py3k breaks
   doCheck = false;
 
@@ -20,4 +23,4 @@ buildPythonPackage rec {
     homepage = "https://github.com/sampsyo/audioread";
     license = lib.licenses.mit;
   };
-}
\ No newline at end of file
+}
diff --git a/pkgs/development/python-modules/azure-common/default.nix b/pkgs/development/python-modules/azure-common/default.nix
index f0d5f883392..7634be18104 100644
--- a/pkgs/development/python-modules/azure-common/default.nix
+++ b/pkgs/development/python-modules/azure-common/default.nix
@@ -7,14 +7,14 @@
 }:
 
 buildPythonPackage rec {
-  version = "1.1.19";
+  version = "1.1.21";
   pname = "azure-common";
   disabled = isPyPy;
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "622d9360a1b61172b4c0d1cc58f939c68402aa19ca44872ab3d224d913aa6d0c";
+    sha256 = "25d696d2affbf5fe9b13aebe66271fce545e673e7e1eeaaec2d73599ba639d63";
   };
 
   propagatedBuildInputs = [ azure-nspkg ];
diff --git a/pkgs/development/python-modules/azure-storage-common/default.nix b/pkgs/development/python-modules/azure-storage-common/default.nix
index 6561163c3a2..dc7a0c3107c 100644
--- a/pkgs/development/python-modules/azure-storage-common/default.nix
+++ b/pkgs/development/python-modules/azure-storage-common/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "azure-storage-common";
-  version = "1.4.0";
+  version = "1.4.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7ab607f9b8fd27b817482194b1e7d43484c65dcf2605aae21ad8706c6891934d";
+    sha256 = "4ec87c7537d457ec95252e0e46477e2c1ccf33774ffefd05d8544682cb0ae401";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/bootstrapped-pip/default.nix b/pkgs/development/python-modules/bootstrapped-pip/default.nix
index 687b7cec4cf..1455a783593 100644
--- a/pkgs/development/python-modules/bootstrapped-pip/default.nix
+++ b/pkgs/development/python-modules/bootstrapped-pip/default.nix
@@ -3,26 +3,26 @@
 let
   wheel_source = fetchPypi {
     pname = "wheel";
-    version = "0.33.1";
+    version = "0.33.4";
     format = "wheel";
-    sha256 = "8eb4a788b3aec8abf5ff68d4165441bc57420c9f64ca5f471f58c3969fe08668";
+    sha256 = "5e79117472686ac0c4aef5bad5172ea73a1c2d1646b808c35926bd26bdfb0c08";
   };
   setuptools_source = fetchPypi {
     pname = "setuptools";
-    version = "41.0.0";
+    version = "41.0.1";
     format = "wheel";
-    sha256 = "e67486071cd5cdeba783bd0b64f5f30784ff855b35071c8670551fd7fc52d4a1";
+    sha256 = "c7769ce668c7a333d84e17fe8b524b1c45e7ee9f7908ad0a73e1eda7e6a5aebf";
   };
 
 in stdenv.mkDerivation rec {
   pname = "pip";
-  version = "19.0.3";
+  version = "19.1.1";
   name = "${python.libPrefix}-bootstrapped-${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
     format = "wheel";
-    sha256 = "bd812612bbd8ba84159d9ddc0266b7fbce712fc9bc98c82dee5750546ec8ec64";
+    sha256 = "993134f0475471b91452ca029d4390dc8f298ac63a712814f101cd1b6db46676";
   };
 
   unpackPhase = ''
diff --git a/pkgs/development/python-modules/buildbot/default.nix b/pkgs/development/python-modules/buildbot/default.nix
index a6f4b73bbf1..6f3e6f17e14 100644
--- a/pkgs/development/python-modules/buildbot/default.nix
+++ b/pkgs/development/python-modules/buildbot/default.nix
@@ -25,11 +25,11 @@ let
 
   package = buildPythonPackage rec {
     pname = "buildbot";
-    version = "2.3.0";
+    version = "2.3.1";
 
     src = fetchPypi {
       inherit pname version;
-      sha256 = "1fdahbpihs93pj640y2079yilca6w7vlwirfcz221885ih148257";
+      sha256 = "cf35d2a87b11aba29c59e47e843deba1be9649114e792e830252ed8f7c35f963";
     };
 
     propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/buildbot/pkg.nix b/pkgs/development/python-modules/buildbot/pkg.nix
index 631572ffa02..c1903b7b10f 100644
--- a/pkgs/development/python-modules/buildbot/pkg.nix
+++ b/pkgs/development/python-modules/buildbot/pkg.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "buildbot-pkg";
-  version = "2.3.0";
+  version = "2.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1ajgvnhwvryi10q9bklpfazi7vxw2my9jlqgwnjccycbr6yznzsw";
+    sha256 = "25968ace0c62cb773ed85d4ddbe07fd5aee68f4455909243ffb3ac12608cf82e";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/buildbot/worker.nix b/pkgs/development/python-modules/buildbot/worker.nix
index 363e6e8af28..006f20a52c6 100644
--- a/pkgs/development/python-modules/buildbot/worker.nix
+++ b/pkgs/development/python-modules/buildbot/worker.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage (rec {
   pname = "buildbot-worker";
-  version = "2.3.0";
+  version = "2.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0nldf4ws1nrkhbapxiy2s8j9fjfbkhp17c5912p6qy3ximfcfa93";
+    sha256 = "a26c68debb70f15abee307aff7b225e91a2eedca9c8d571212c391e615c36f53";
   };
 
   propagatedBuildInputs = [ twisted future ];
diff --git a/pkgs/development/python-modules/cachetools/default.nix b/pkgs/development/python-modules/cachetools/default.nix
index 2581ba9c95f..51bf0e753a9 100644
--- a/pkgs/development/python-modules/cachetools/default.nix
+++ b/pkgs/development/python-modules/cachetools/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "cachetools";
-  version = "3.1.0";
+  version = "3.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9efcc9fab3b49ab833475702b55edd5ae07af1af7a4c627678980b45e459c460";
+    sha256 = "8ea2d3ce97850f31e4a08b0e2b5e6c34997d7216a9d2c98e0f3978630d4da69a";
   };
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/python-modules/caldav/default.nix b/pkgs/development/python-modules/caldav/default.nix
index 027bc1784d1..aa3aa8b9c02 100644
--- a/pkgs/development/python-modules/caldav/default.nix
+++ b/pkgs/development/python-modules/caldav/default.nix
@@ -3,13 +3,13 @@
 
 buildPythonPackage rec {
   pname = "caldav";
-  version = "0.6.0";
+  version = "0.6.1";
 
   propagatedBuildInputs = [ tzlocal requests vobject lxml ];
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1ll9knpc50yxx858hrvfnapdi2a6g1pz9cnjhwffry2x7r4ckarz";
+    sha256 = "eddb7f4e6a3eb5f02eaa2227817a53ac4372d4c4d51876536f4c6f00282f569e";
   };
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/cement/default.nix b/pkgs/development/python-modules/cement/default.nix
index c2f5a09e851..edcb4086cf2 100644
--- a/pkgs/development/python-modules/cement/default.nix
+++ b/pkgs/development/python-modules/cement/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "cement";
-  version = "3.0.2";
+  version = "3.0.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8c692493c9d97b07e4a2c0770223fa5ee12a3110cfcb246d7d26fffe22edd22e";
+    sha256 = "10a8459dc9fc31d6c038ede24a9081c5c3bd5fcd75b071e01baf281f81c9eace";
   };
 
   # Disable test tests since they depend on a memcached server running on
diff --git a/pkgs/development/python-modules/cerberus/default.nix b/pkgs/development/python-modules/cerberus/default.nix
index adf363e0513..81f6ef1e837 100644
--- a/pkgs/development/python-modules/cerberus/default.nix
+++ b/pkgs/development/python-modules/cerberus/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "Cerberus";
-  version = "1.3";
+  version = "1.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0afhm8x812shj1fbj9jri6wcrlv0avcfis7619sl140mlhpgpzkz";
+    sha256 = "0be48fc0dc84f83202a5309c0aa17cd5393e70731a1698a50d118b762fbe6875";
   };
 
   checkInputs = [ pytestrunner pytest ];
diff --git a/pkgs/development/python-modules/cleo/default.nix b/pkgs/development/python-modules/cleo/default.nix
index 31a33b73c2b..a1da38cb6ea 100644
--- a/pkgs/development/python-modules/cleo/default.nix
+++ b/pkgs/development/python-modules/cleo/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "cleo";
-  version = "0.7.2";
+  version = "0.7.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "091nzpfp5incd2fzqych78rvyx4i3djr50cnizbjzr3dc7g00l3s";
+    sha256 = "58d26642fa608a1515093275cd98875100c7d50f01fc1f3bbb7a78dbb73e4b14";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/clikit/default.nix b/pkgs/development/python-modules/clikit/default.nix
index 0d5247c02e0..d8179d2e3b6 100644
--- a/pkgs/development/python-modules/clikit/default.nix
+++ b/pkgs/development/python-modules/clikit/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "clikit";
-  version = "0.2.3";
+  version = "0.2.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0zr1s0xhk62p9a6zcp5whvsb27lddyk8gx03k9l8q18jp7y3igbv";
+    sha256 = "d6807cf4a41e6b981b056075c0aefca2db1dabc597ed18fa4d92b8b2e2678835";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/cmd2/default.nix b/pkgs/development/python-modules/cmd2/default.nix
index 32f852a2b63..8b171fb3c8d 100644
--- a/pkgs/development/python-modules/cmd2/default.nix
+++ b/pkgs/development/python-modules/cmd2/default.nix
@@ -10,7 +10,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0f5f5rgwckci2fqwbzjk5sfpwxqn5gy0biz8sjll4v5zgvjsswxq";
+    sha256 = "b873ade57ebf6c42a9d4e8c705fc2b16777e9d2e53fec5b113914dc65f2eae38";
   };
 
   LC_ALL="en_US.UTF-8";
diff --git a/pkgs/development/python-modules/dask/default.nix b/pkgs/development/python-modules/dask/default.nix
index 8a2bd2187f9..cd38c8f137c 100644
--- a/pkgs/development/python-modules/dask/default.nix
+++ b/pkgs/development/python-modules/dask/default.nix
@@ -12,11 +12,11 @@
 
 buildPythonPackage rec {
   pname = "dask";
-  version = "1.1.5";
+  version = "1.2.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4b0b82a4d61714d3a49953274b1a8a689a51eacf89c4c2ff18aa7f6282ce515e";
+    sha256 = "5e7876bae2a01b355d1969b73aeafa23310febd8c353163910b73e93dc7e492c";
   };
 
   checkInputs = [ pytest ];
diff --git a/pkgs/development/python-modules/dependency-injector/default.nix b/pkgs/development/python-modules/dependency-injector/default.nix
index d6315575766..af2607bca14 100644
--- a/pkgs/development/python-modules/dependency-injector/default.nix
+++ b/pkgs/development/python-modules/dependency-injector/default.nix
@@ -9,11 +9,11 @@ in
 
 buildPythonPackage rec {
   pname = "dependency-injector";
-  version = "3.14.5";
+  version = "3.14.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5e0c73fbec99d2782479f6d8c292be87ed8672eb42b451e7f7a5d52a3458c4e5";
+    sha256 = "2e1889a0981381f557b0d14cba900adf7476817c53c13bfb04e2a30b3db0f1d3";
   };
 
   propagatedBuildInputs = [ six ];
diff --git a/pkgs/development/python-modules/distlib/default.nix b/pkgs/development/python-modules/distlib/default.nix
index 73bc143beeb..aea6bcd9504 100644
--- a/pkgs/development/python-modules/distlib/default.nix
+++ b/pkgs/development/python-modules/distlib/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "distlib";
-  version = "0.2.9";
+  version = "0.2.9.post0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1z9c4ig19hjk18agwljv5ib3pphicg50w9z5zsnqn97q7vnv17gm";
+    sha256 = "ecb3d0e4f71d0fa7f38db6bcc276c7c9a1c6638a516d726495934a553eb3fbe0";
     extension = "zip";
   };
 
diff --git a/pkgs/development/python-modules/django_reversion/default.nix b/pkgs/development/python-modules/django_reversion/default.nix
index 9dfdf51186f..69c2f531728 100644
--- a/pkgs/development/python-modules/django_reversion/default.nix
+++ b/pkgs/development/python-modules/django_reversion/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "django-reversion";
-  version = "3.0.3";
+  version = "3.0.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0xjs803r5fxaqpkjbpsb17j8racxa4q1nvjjaj1akkgkgw9dj343";
+    sha256 = "ed46722389fb2441860d471c7538967dee545bcee891d3d907b04f4baa98f5fa";
   };
 
   # tests assume the availability of a mysql/postgresql database
diff --git a/pkgs/development/python-modules/djangorestframework/default.nix b/pkgs/development/python-modules/djangorestframework/default.nix
index 49e5c5f0b6a..12dcbf3993a 100644
--- a/pkgs/development/python-modules/djangorestframework/default.nix
+++ b/pkgs/development/python-modules/djangorestframework/default.nix
@@ -1,11 +1,11 @@
 { stdenv, buildPythonPackage, fetchPypi, django }:
 buildPythonPackage rec {
-  version = "3.9.3";
+  version = "3.9.4";
   pname = "djangorestframework";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1w1rc8cpw89sll5wsg1aj1w3klk91a1bsdz9y4zhg5xrc0qpd118";
+    sha256 = "c12869cfd83c33d579b17b3cb28a2ae7322a53c3ce85580c2a2ebe4e3f56c4fb";
   };
 
   # Test settings are missing
diff --git a/pkgs/development/python-modules/dockerfile-parse/default.nix b/pkgs/development/python-modules/dockerfile-parse/default.nix
index c8ecbceb5e8..678276b1b31 100644
--- a/pkgs/development/python-modules/dockerfile-parse/default.nix
+++ b/pkgs/development/python-modules/dockerfile-parse/default.nix
@@ -1,12 +1,12 @@
 { stdenv, buildPythonPackage, fetchPypi, six, pytestcov, pytest }:
 
 buildPythonPackage rec {
-  version = "0.0.13";
+  version = "0.0.14";
   pname = "dockerfile-parse";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1p0x81q3m3nlj4rqal9a959xcbjhncb548wd4wr3l7dpiajqqc9c";
+    sha256 = "0b829a9e25ac9af17a0affa41c0fca6541a03b8edb0178f60dc036e2ce59eeb5";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/docrep/default.nix b/pkgs/development/python-modules/docrep/default.nix
index 46106971b6e..8e6b00d808c 100644
--- a/pkgs/development/python-modules/docrep/default.nix
+++ b/pkgs/development/python-modules/docrep/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "docrep";
-  version = "0.2.5";
+  version = "0.2.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a67c34d3a44892d3e2a0af0ac55c02b949a37ced9d55c0d7ade76362ba6692d7";
+    sha256 = "c48939ae14d79172839a5bbaf5a570add47f6cc44d2c18f6b1fac8f1c38dec4d";
   };
 
   checkInputs = [ pytest ];
diff --git a/pkgs/development/python-modules/easyprocess/default.nix b/pkgs/development/python-modules/easyprocess/default.nix
index 46948f2485c..7f8a803740d 100644
--- a/pkgs/development/python-modules/easyprocess/default.nix
+++ b/pkgs/development/python-modules/easyprocess/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "EasyProcess";
-  version = "0.2.5";
+  version = "0.2.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0gdl6y37g8rns2i26d2zlx7x4kbpql9h5qd8k23ka69q6frcpb8k";
+    sha256 = "f757cd16cdab5b87117b4ee6cf197f99bfa109253364c7bd717ad0bcd39218a0";
   };
 
   # No tests
diff --git a/pkgs/development/python-modules/elasticsearch/default.nix b/pkgs/development/python-modules/elasticsearch/default.nix
index a909d258942..dc991f529fc 100644
--- a/pkgs/development/python-modules/elasticsearch/default.nix
+++ b/pkgs/development/python-modules/elasticsearch/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage (rec {
   pname = "elasticsearch";
-  version = "7.0.1";
+  version = "7.0.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0ax00k6xi7g419azjdn8g19zad304xmxw62pcfp3njawqnlnwp24";
+    sha256 = "cbc73831c63fa2824538df76fcb2c4be007b43dbd9e7788ae70ea6d24109925b";
   };
 
   # Check is disabled because running them destroy the content of the local cluster!
diff --git a/pkgs/development/python-modules/filelock/default.nix b/pkgs/development/python-modules/filelock/default.nix
index a548f1ab5d2..3592a1f28c7 100644
--- a/pkgs/development/python-modules/filelock/default.nix
+++ b/pkgs/development/python-modules/filelock/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "filelock";
-  version = "3.0.10";
+  version = "3.0.12";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1rjv7g85smh6hrq6n9h721kh83qjv8mfp0ksdnbqbbsd82xw246n";
+    sha256 = "18d82244ee114f543149c66a6e0c14e9c4f8a1044b5cdaadd0f82159d6a6ff59";
   };
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/python-modules/flask/default.nix b/pkgs/development/python-modules/flask/default.nix
index 67cd9aa457e..df39b2ea725 100644
--- a/pkgs/development/python-modules/flask/default.nix
+++ b/pkgs/development/python-modules/flask/default.nix
@@ -2,12 +2,12 @@
 , itsdangerous, click, werkzeug, jinja2, pytest }:
 
 buildPythonPackage rec {
-  version = "1.0.2";
+  version = "1.0.3";
   pname = "Flask";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2271c0070dbcb5275fad4a82e29f23ab92682dc45f9dfbc22c02ba9b9322ce48";
+    sha256 = "ad7c6d841e64296b962296c2c2dabc6543752985727af86a975072dea984b6f3";
   };
 
   checkInputs = [ pytest ];
diff --git a/pkgs/development/python-modules/freezegun/default.nix b/pkgs/development/python-modules/freezegun/default.nix
index 80a6f439de8..3f0fd31d8a1 100644
--- a/pkgs/development/python-modules/freezegun/default.nix
+++ b/pkgs/development/python-modules/freezegun/default.nix
@@ -5,19 +5,20 @@
 , six
 , mock
 , nose
+, pytest
 }:
 
 buildPythonPackage rec {
   pname = "freezegun";
-  version = "0.3.11";
+  version = "0.3.12";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e839b43bfbe8158b4d62bb97e6313d39f3586daf48e1314fb1083d2ef17700da";
+    sha256 = "2a4d9c8cd3c04a201e20c313caf8b6338f1cfa4cda43f46a94cc4a9fd13ea5e7";
   };
 
   propagatedBuildInputs = [ dateutil six ];
-  checkInputs = [ mock nose ];
+  checkInputs = [ mock nose pytest ];
 
   meta = with stdenv.lib; {
     description = "FreezeGun: Let your Python tests travel through time";
diff --git a/pkgs/development/python-modules/genshi/default.nix b/pkgs/development/python-modules/genshi/default.nix
index ad6f4ee1b21..c86fae5d0e9 100644
--- a/pkgs/development/python-modules/genshi/default.nix
+++ b/pkgs/development/python-modules/genshi/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "Genshi";
-  version = "0.7.1";
+  version = "0.7.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0d87ae62cf2ed92133f35725da51e02d09f79bb4cb986f0d948408a0279dd3f8";
+    sha256 = "7933c95151d7dd2124a2b4c8dd85bb6aec881ca17c0556da0b40e56434b313a0";
   };
 
   # FAIL: test_sanitize_remove_script_elem (genshi.filters.tests.html.HTMLSanitizerTestCase)
diff --git a/pkgs/development/python-modules/geopy/default.nix b/pkgs/development/python-modules/geopy/default.nix
index da338648e4c..9dbfeb7472c 100644
--- a/pkgs/development/python-modules/geopy/default.nix
+++ b/pkgs/development/python-modules/geopy/default.nix
@@ -9,12 +9,12 @@
 
 buildPythonPackage rec {
   pname = "geopy";
-  version = "1.18.1";
+  version = "1.20.0";
   disabled = !isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "07a21f699b3daaef726de7278f5d65f944609306ab8a389e9f56e09abf86eac8";
+    sha256 = "9419bc90ee6231590c4ae7acf1cf126cefbd0736942da7a6a1436946e80830e2";
   };
 
   doCheck = false;  # too much
diff --git a/pkgs/development/python-modules/google_cloud_bigtable/default.nix b/pkgs/development/python-modules/google_cloud_bigtable/default.nix
index c39d14fcf5e..51782dce167 100644
--- a/pkgs/development/python-modules/google_cloud_bigtable/default.nix
+++ b/pkgs/development/python-modules/google_cloud_bigtable/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-bigtable";
-  version = "0.32.1";
+  version = "0.32.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "bb113894e1322102d4917740be4870798cad76aa4291ff742ada5548988b2223";
+    sha256 = "40d1fc8009c228f70bd0e2176e73a3f101051ad73889b3d25a5df672c029a8bd";
   };
 
   checkInputs = [ pytest mock ];
diff --git a/pkgs/development/python-modules/google_cloud_datastore/default.nix b/pkgs/development/python-modules/google_cloud_datastore/default.nix
index 54d772d7e9c..f514d22ef08 100644
--- a/pkgs/development/python-modules/google_cloud_datastore/default.nix
+++ b/pkgs/development/python-modules/google_cloud_datastore/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-datastore";
-  version = "1.7.3";
+  version = "1.7.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e00bddc03670be206ddcbc5c1cbda0acc51db963f0ff54189bd6710f8e93a4c9";
+    sha256 = "7a44d9b0263cbbe05963522f61ba177e64282043f30999e0bc3368fd79a3af12";
   };
 
   checkInputs = [ pytest mock ];
diff --git a/pkgs/development/python-modules/google_cloud_dns/default.nix b/pkgs/development/python-modules/google_cloud_dns/default.nix
index e9ff0b81ec7..398c2b66467 100644
--- a/pkgs/development/python-modules/google_cloud_dns/default.nix
+++ b/pkgs/development/python-modules/google_cloud_dns/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-dns";
-  version = "0.29.2";
+  version = "0.29.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d1476115c983094f124fe8b7a1350414072c048bf236336f3ab0816912e6e6bf";
+    sha256 = "a876811e44554fb8a8db4df4a2be649f356e1d9d97eefccfaf5a8d5273819d22";
   };
 
   checkInputs = [ pytest mock ];
diff --git a/pkgs/development/python-modules/google_cloud_logging/default.nix b/pkgs/development/python-modules/google_cloud_logging/default.nix
index d6a6ede039d..5dc45ad469d 100644
--- a/pkgs/development/python-modules/google_cloud_logging/default.nix
+++ b/pkgs/development/python-modules/google_cloud_logging/default.nix
@@ -12,11 +12,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-logging";
-  version = "1.10.0";
+  version = "1.10.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "13ac67399289b202b409e6cef7a87dea32ddabf902f69a677bd05554f6aecf0b";
+    sha256 = "a70201ca9f3972ff0e3272c5628b22ed9227e10ac00e570c28087377733632df";
   };
 
   checkInputs = [ pytest mock webapp2 django flask ];
diff --git a/pkgs/development/python-modules/google_cloud_resource_manager/default.nix b/pkgs/development/python-modules/google_cloud_resource_manager/default.nix
index fd67709dd37..1bdd3635b21 100644
--- a/pkgs/development/python-modules/google_cloud_resource_manager/default.nix
+++ b/pkgs/development/python-modules/google_cloud_resource_manager/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-resource-manager";
-  version = "0.28.3";
+  version = "0.28.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5999f327bfa6692679e82690c3e61f11097bbbe3ecee370210625676bac605e6";
+    sha256 = "ae43be426532b875c161625626ab759ecef633801e21f14b2ef8380884a2193b";
   };
 
   checkInputs = [ pytest mock ];
diff --git a/pkgs/development/python-modules/google_cloud_runtimeconfig/default.nix b/pkgs/development/python-modules/google_cloud_runtimeconfig/default.nix
index c52440e0ee1..f347a1f2553 100644
--- a/pkgs/development/python-modules/google_cloud_runtimeconfig/default.nix
+++ b/pkgs/development/python-modules/google_cloud_runtimeconfig/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-runtimeconfig";
-  version = "0.28.3";
+  version = "0.28.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8188a098c2c6603aa0cad50f8778a84a0f36a62062309a331a41271372fac798";
+    sha256 = "d5b097a15fa9bb50442ccaf25fdb4622fdf09b8a873abf549c432d8fdc16c2f1";
   };
 
   checkInputs = [ pytest mock ];
diff --git a/pkgs/development/python-modules/google_cloud_storage/default.nix b/pkgs/development/python-modules/google_cloud_storage/default.nix
index aab9f827da0..efb0c6aacd8 100644
--- a/pkgs/development/python-modules/google_cloud_storage/default.nix
+++ b/pkgs/development/python-modules/google_cloud_storage/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-storage";
-  version = "1.15.0";
+  version = "1.15.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "13b9ah54z6g3w8p74a1anmyz84nrxy27snqv6vp95wsizp8zwsyn";
+    sha256 = "8032e576e2f91a1d3de2355118040c3bcd9916e0453a6b3f64c1b42ed151690a";
   };
 
   checkInputs = [ pytest mock ];
diff --git a/pkgs/development/python-modules/google_cloud_trace/default.nix b/pkgs/development/python-modules/google_cloud_trace/default.nix
index 99fed298c1d..1422469784d 100644
--- a/pkgs/development/python-modules/google_cloud_trace/default.nix
+++ b/pkgs/development/python-modules/google_cloud_trace/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-trace";
-  version = "0.20.2";
+  version = "0.20.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2129e736d5a21242a4840dc4b494720feb51edd6fafdc12cd6da4b0cb24e5295";
+    sha256 = "438ac953248c93972a5b1a0be24ec9bf75c947cee4159dd731b585ce81911f87";
   };
 
   checkInputs = [ pytest mock ];
diff --git a/pkgs/development/python-modules/googleapis_common_protos/default.nix b/pkgs/development/python-modules/googleapis_common_protos/default.nix
index d17b98e2b68..337624012aa 100644
--- a/pkgs/development/python-modules/googleapis_common_protos/default.nix
+++ b/pkgs/development/python-modules/googleapis_common_protos/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "googleapis-common-protos";
-  version = "1.5.9";
+  version = "1.5.10";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "627ec53fab43d06c1b5c950e217fa9819e169daf753111a7f244e94bf8fb3384";
+    sha256 = "d564872083af40bbcc7091340f17db778a316525c7c76497d58d11b98ca2aa74";
   };
 
   propagatedBuildInputs = [ protobuf ];
diff --git a/pkgs/development/python-modules/gpy/default.nix b/pkgs/development/python-modules/gpy/default.nix
index cb4cdca1e47..8bbcaed377a 100644
--- a/pkgs/development/python-modules/gpy/default.nix
+++ b/pkgs/development/python-modules/gpy/default.nix
@@ -3,12 +3,12 @@
 
 buildPythonPackage rec {
   pname = "GPy";
-  version = "1.9.6";
+  version = "1.9.8";
   name  = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f11d649b3320d4cb836d283706754953277c8696977726803ccd3ee1355a94a7";
+    sha256 = "33a55bb99fe5c7cdd8df4f8e220e3b87574afde49f5654b3ef7c0445018af4a0";
   };
 
   # running tests produces "ImportError: cannot import name 'linalg_cython'"
diff --git a/pkgs/development/python-modules/graph_nets/default.nix b/pkgs/development/python-modules/graph_nets/default.nix
index 58aa6c84ade..41c13b1fbd4 100644
--- a/pkgs/development/python-modules/graph_nets/default.nix
+++ b/pkgs/development/python-modules/graph_nets/default.nix
@@ -13,11 +13,11 @@
 
 buildPythonPackage rec {
   pname = "graph_nets";
-  version = "1.0.3";
+  version = "1.0.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "15cbs9smmgqz2n9mnlzdbqj3iv9iw179d2g0f9lnimdy7xl4jqdf";
+    sha256 = "6f27f0358a477d4ec3ab300bf09944b4dfdd5c10b0a5f7ac06bcb32d1327ebe1";
   };
 
   buildInputs = [];
diff --git a/pkgs/development/python-modules/gym/default.nix b/pkgs/development/python-modules/gym/default.nix
index ea920663846..e27aed0627b 100644
--- a/pkgs/development/python-modules/gym/default.nix
+++ b/pkgs/development/python-modules/gym/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "gym";
-  version = "0.12.1";
+  version = "0.12.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f8bee3672759aeec4271169dcbb2afc069b898c7f92882d965c59be8085f2b35";
+    sha256 = "027422f59b662748eae3420b804e35bbf953f62d40cd96d2de9f842c08de822e";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/hdbscan/default.nix b/pkgs/development/python-modules/hdbscan/default.nix
index 04cffbef78b..72d818c25d6 100644
--- a/pkgs/development/python-modules/hdbscan/default.nix
+++ b/pkgs/development/python-modules/hdbscan/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "hdbscan";
-  version = "0.8.20";
+  version = "0.8.22";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "263e9f34db63eec217d50f2ca3e65049c065775dc4095b5ee817824cd2b5b51b";
+    sha256 = "5cfdc25375123eb9a72363449979141cc928c1953f220f0f81d7baabcaccec2d";
   };
 
   patches = [
diff --git a/pkgs/development/python-modules/holoviews/default.nix b/pkgs/development/python-modules/holoviews/default.nix
index 405b66ce724..bd0cbda48d8 100644
--- a/pkgs/development/python-modules/holoviews/default.nix
+++ b/pkgs/development/python-modules/holoviews/default.nix
@@ -15,11 +15,11 @@
 
 buildPythonPackage rec {
   pname = "holoviews";
-  version = "1.12.2";
+  version = "1.12.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0i4lfnajz685hlp9m0bjn7s279bv6mm5118b1qmldzqdnvw4s032";
+    sha256 = "df64c0f163fe8b43d28cf5bcdeb8abc45d882aedca525b870f17987edd0c80a2";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/identify/default.nix b/pkgs/development/python-modules/identify/default.nix
index 2db6ad1c3d0..8837e34c788 100644
--- a/pkgs/development/python-modules/identify/default.nix
+++ b/pkgs/development/python-modules/identify/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "identify";
-  version = "1.4.2";
+  version = "1.4.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "443f419ca6160773cbaf22dbb302b1e436a386f23129dbb5482b68a147c2eca9";
+    sha256 = "432c548d6138cb57a3d8f62f079a025a29b8ae34a50dd3b496bbf661818f2bc0";
   };
 
   # Tests not included in PyPI tarball
diff --git a/pkgs/development/python-modules/imgaug/default.nix b/pkgs/development/python-modules/imgaug/default.nix
index 0c5ce54a229..d950036ec48 100644
--- a/pkgs/development/python-modules/imgaug/default.nix
+++ b/pkgs/development/python-modules/imgaug/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "imgaug";
-  version = "0.2.8";
+  version = "0.2.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "03dcbb3d7485de372eacde4b890b676e0c7a992524ee4bc72bd05a9a1cc5f9a4";
+    sha256 = "42b0c4c8cbe197d4f5dbd33960a1140f8a0d9c22c0a8851306ecbbc032092de8";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/ipython/default.nix b/pkgs/development/python-modules/ipython/default.nix
index 10bc1ecf2f8..f94b690b7f7 100644
--- a/pkgs/development/python-modules/ipython/default.nix
+++ b/pkgs/development/python-modules/ipython/default.nix
@@ -17,22 +17,30 @@
 , pexpect
 , appnope
 , backcall
+, fetchpatch
 }:
 
 buildPythonPackage rec {
   pname = "ipython";
-  version = "7.2.0";
+  version = "7.5.0";
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6a9496209b76463f1dec126ab928919aaf1f55b38beb9219af3fe202f6bbdd12";
+    sha256 = "e840810029224b56cd0d9e7719dc3b39cf84d577f8ac686547c8ba7a06eeab26";
   };
 
   prePatch = lib.optionalString stdenv.isDarwin ''
     substituteInPlace setup.py --replace "'gnureadline'" " "
   '';
 
+  patches = [
+    (fetchpatch {
+      url = "https://github.com/ipython/ipython/commit/e1b53e9ef91a43b9e275bb9e48b4253218375d87.patch";
+      sha256 = "sha256:0q7zsgalwxss6aikhakbdkvvz0g4ac4sa3ncrklm74ksqh56rsgb";
+    })
+  ];
+
   buildInputs = [ glibcLocales ];
 
   checkInputs = [ nose pygments ];
diff --git a/pkgs/development/python-modules/isort/default.nix b/pkgs/development/python-modules/isort/default.nix
index 532b743bab4..979213f945b 100644
--- a/pkgs/development/python-modules/isort/default.nix
+++ b/pkgs/development/python-modules/isort/default.nix
@@ -1,15 +1,15 @@
 { lib, buildPythonPackage, fetchPypi, isPy27, futures, backports_functools_lru_cache, mock, pytest }:
 
 let
-  skipTests = lib.optional isPy27 "test_standard_library_deprecates_user_issue_778";
+  skipTests = [ "test_requirements_finder" "test_pipfile_finder" ] ++ lib.optional isPy27 "test_standard_library_deprecates_user_issue_778";
   testOpts = lib.concatMapStringsSep " " (t: "--deselect test_isort.py::${t}") skipTests;
 in buildPythonPackage rec {
   pname = "isort";
-  version = "4.3.17"; # Note 4.x is the last version that supports Python2
+  version = "4.3.20"; # Note 4.x is the last version that supports Python2
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "268067462aed7eb2a1e237fcb287852f22077de3fb07964e87e00f829eea2d1a";
+    sha256 = "c40744b6bc5162bbb39c1257fe298b7a393861d50978b565f3ccd9cb9de0182a";
   };
 
   propagatedBuildInputs = lib.optionals isPy27 [ futures backports_functools_lru_cache ];
diff --git a/pkgs/development/python-modules/ledgerblue/default.nix b/pkgs/development/python-modules/ledgerblue/default.nix
index 9eba46cd303..3f9f58b5203 100644
--- a/pkgs/development/python-modules/ledgerblue/default.nix
+++ b/pkgs/development/python-modules/ledgerblue/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "ledgerblue";
-  version = "0.1.23";
+  version = "0.1.24";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "476a1d1f6d9e7f72befff0ea4e631461882c9c1c620b92878503bf46383c8d20";
+    sha256 = "fc111ed5db8da93f280928d966f9d87416b464f5f09cec80b60e88c4c1265026";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/libusb1/default.nix b/pkgs/development/python-modules/libusb1/default.nix
index a2065f24316..b63704bf8e0 100644
--- a/pkgs/development/python-modules/libusb1/default.nix
+++ b/pkgs/development/python-modules/libusb1/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "libusb1";
-  version = "1.7";
+  version = "1.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "03vylg5mdsxp2nyk8sm7yxmb470hcb92q263dfq8d6b9xp96ckwx";
+    sha256 = "adf64a4f3f5c94643a1286f8153bcf4bc787c348b38934aacd7fe17fbeebc571";
   };
 
   postPatch = ''
diff --git a/pkgs/development/python-modules/llvmlite/default.nix b/pkgs/development/python-modules/llvmlite/default.nix
index 15e53dcffb2..e70438a8817 100644
--- a/pkgs/development/python-modules/llvmlite/default.nix
+++ b/pkgs/development/python-modules/llvmlite/default.nix
@@ -10,13 +10,13 @@
 
 buildPythonPackage rec {
   pname = "llvmlite";
-  version = "0.25.0";
+  version = "0.29.0";
 
   disabled = isPyPy;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "fd64def9a51dd7dc61913a7a08eeba5b9785522740bec5a7c5995b2a90525025";
+    sha256 = "3adb0d4c9a17ad3dca82c7e88118babd61eeee0ee985ce31fa43ec27aa98c963";
   };
 
   nativeBuildInputs = [ llvm ];
diff --git a/pkgs/development/python-modules/mecab-python3/default.nix b/pkgs/development/python-modules/mecab-python3/default.nix
index 4a6f6b0c4dd..df691fb05c8 100644
--- a/pkgs/development/python-modules/mecab-python3/default.nix
+++ b/pkgs/development/python-modules/mecab-python3/default.nix
@@ -3,6 +3,7 @@
 , fetchPypi
 , mecab
 , swig
+, setuptools_scm
 }:
 
 buildPythonPackage rec {
@@ -17,10 +18,13 @@ buildPythonPackage rec {
   nativeBuildInputs = [
     mecab # for mecab-config
     swig
+    setuptools_scm
   ];
 
   buildInputs = [ mecab ];
 
+  doCheck = false;
+
   meta = with lib; {
     description = "A python wrapper for mecab: Morphological Analysis engine";
     homepage =  https://github.com/SamuraiT/mecab-python3;
diff --git a/pkgs/development/python-modules/minio/default.nix b/pkgs/development/python-modules/minio/default.nix
index a87c6711d43..f5a37832e8f 100644
--- a/pkgs/development/python-modules/minio/default.nix
+++ b/pkgs/development/python-modules/minio/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "minio";
-  version = "4.0.14";
+  version = "4.0.17";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "72c8ab7b1c25f875273e66762982816af8ada2ced88b6cd991e979f479c34875";
+    sha256 = "0fb1faab701008a1ff05b9b2497b6ba52d1aff963323356ed86f2771b186db6b";
   };
 
   disabled = !isPy3k;
diff --git a/pkgs/development/python-modules/msgpack-numpy/default.nix b/pkgs/development/python-modules/msgpack-numpy/default.nix
index 17ae66a0fdd..45b64355e45 100644
--- a/pkgs/development/python-modules/msgpack-numpy/default.nix
+++ b/pkgs/development/python-modules/msgpack-numpy/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "msgpack-numpy";
-  version = "0.4.4.2";
+  version = "0.4.4.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a1638108538aaba55bebaef9d847dfb3064bb1c829e68301716a6a956fa6a0d6";
+    sha256 = "a02c0069fb580c6a2dda9b98d40d34fda3840863112a5465ba9b54fa2ee005a5";
   };
 
   buildInputs = [
diff --git a/pkgs/development/python-modules/nbconvert/default.nix b/pkgs/development/python-modules/nbconvert/default.nix
index d782cac27d0..11552a7c342 100644
--- a/pkgs/development/python-modules/nbconvert/default.nix
+++ b/pkgs/development/python-modules/nbconvert/default.nix
@@ -22,11 +22,11 @@
 
 buildPythonPackage rec {
   pname = "nbconvert";
-  version = "5.4.1";
+  version = "5.5.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "302554a2e219bc0fc84f3edd3e79953f3767b46ab67626fdec16e38ba3f7efe4";
+    sha256 = "138381baa41d83584459b5cfecfc38c800ccf1f37d9ddd0bd440783346a4c39c";
   };
 
   checkInputs = [ nose pytest glibcLocales ];
diff --git a/pkgs/development/python-modules/nbsmoke/default.nix b/pkgs/development/python-modules/nbsmoke/default.nix
index 2816315f105..ee4434c1d1d 100644
--- a/pkgs/development/python-modules/nbsmoke/default.nix
+++ b/pkgs/development/python-modules/nbsmoke/default.nix
@@ -13,11 +13,11 @@
 
 buildPythonPackage rec {
   pname = "nbsmoke";
-  version = "0.2.7";
+  version = "0.2.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "40891e556dc9e252da2a649028cacb949fc8efb81062ada7d9a87a01b08bb454";
+    sha256 = "eeda6c59b61130b9116a3d935e7c80ec5f617d7db8918d23289b2426efa229eb";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/ncclient/default.nix b/pkgs/development/python-modules/ncclient/default.nix
index eaf75d467cb..10baadcab30 100644
--- a/pkgs/development/python-modules/ncclient/default.nix
+++ b/pkgs/development/python-modules/ncclient/default.nix
@@ -12,11 +12,11 @@
 
 buildPythonPackage rec {
   pname = "ncclient";
-  version = "0.6.4";
+  version = "0.6.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "47d5af7398f16d609eebd02be2ecbd997b364032b5dc6d4927c810ea24f39080";
+    sha256 = "2b367354d1cd25b79b8798a0b4c1949590d890057f2a252e6e970a9ab744e009";
   };
 
   checkInputs = [ nose rednose ];
diff --git a/pkgs/development/python-modules/numba/default.nix b/pkgs/development/python-modules/numba/default.nix
index 41aa7f7a0c8..ebb7aac3924 100644
--- a/pkgs/development/python-modules/numba/default.nix
+++ b/pkgs/development/python-modules/numba/default.nix
@@ -13,12 +13,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.40.1";
+  version = "0.44.0";
   pname = "numba";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "52d046c13bcf0de79dbfb936874b7228f141b9b8e3447cc35855e9ad3e12aa33";
+    sha256 = "56421bfc62f3c7c996ff11d5db7fc410909564e41b55379a82b9188fa4aa22f9";
   };
 
   NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-I${libcxx}/include/c++/v1";
diff --git a/pkgs/development/python-modules/numpy/default.nix b/pkgs/development/python-modules/numpy/default.nix
index 880d368a600..d82adaeea28 100644
--- a/pkgs/development/python-modules/numpy/default.nix
+++ b/pkgs/development/python-modules/numpy/default.nix
@@ -16,12 +16,12 @@ let
   };
 in buildPythonPackage rec {
   pname = "numpy";
-  version = "1.16.3";
+  version = "1.16.4";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "78a6f89da87eeb48014ec652a65c4ffde370c036d780a995edaeb121d3625621";
+    sha256 = "7242be12a58fec245ee9734e625964b97cf7e3f2f7d016603f9e56660ce479c7";
   };
 
   nativeBuildInputs = [ gfortran pytest ];
diff --git a/pkgs/development/python-modules/paramz/default.nix b/pkgs/development/python-modules/paramz/default.nix
index f537b8d8e31..0183379ac00 100644
--- a/pkgs/development/python-modules/paramz/default.nix
+++ b/pkgs/development/python-modules/paramz/default.nix
@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "paramz";
-  version = "0.9.4";
+  version = "0.9.5";
   name  = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "179ca77a965e6e724217257793e3c8c022285ea2190a85e0826ac98dea316219";
+    sha256 = "0917211c0f083f344e7f1bc997e0d713dbc147b6380bc19f606119394f820b9a";
   };
 
   propagatedBuildInputs = [ numpy scipy six decorator ];
diff --git a/pkgs/development/python-modules/phonenumbers/default.nix b/pkgs/development/python-modules/phonenumbers/default.nix
index 222f5137475..f30a73be8fb 100644
--- a/pkgs/development/python-modules/phonenumbers/default.nix
+++ b/pkgs/development/python-modules/phonenumbers/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "phonenumbers";
-  version = "8.10.11";
+  version = "8.10.12";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1rd46dryxkwlha9lfqqwywazlh908ngh6076zz3myhzf8h3dmxnz";
+    sha256 = "708c19860afb05085d5fe91b52fcbce9e1be3c020fe8c9b6f6d028879f5a7d5e";
   };
 
   meta = {
diff --git a/pkgs/development/python-modules/pip/default.nix b/pkgs/development/python-modules/pip/default.nix
index da5fc24fb22..76f3b0b7176 100644
--- a/pkgs/development/python-modules/pip/default.nix
+++ b/pkgs/development/python-modules/pip/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "pip";
-  version = "19.0.3";
+  version = "19.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6e6f197a1abfb45118dbb878b5c859a0edbdd33fd250100bc015b67fded4b9f2";
+    sha256 = "44d3d7d3d30a1eb65c7e5ff1173cdf8f7467850605ac7cc3707b6064bddd0958";
   };
 
   # pip detects that we already have bootstrapped_pip "installed", so we need
diff --git a/pkgs/development/python-modules/pyacoustid/default.nix b/pkgs/development/python-modules/pyacoustid/default.nix
index 7dfd00db25f..29cdfbc6599 100644
--- a/pkgs/development/python-modules/pyacoustid/default.nix
+++ b/pkgs/development/python-modules/pyacoustid/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "pyacoustid";
-  version = "1.1.5";
+  version = "1.1.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "efb6337a470c9301a108a539af7b775678ff67aa63944e9e04ce4216676cc777";
+    sha256 = "07394a8ae84625a0a6fef2d891d19687ff59cd955caaf48097da2826043356fd";
   };
 
   propagatedBuildInputs = [ requests audioread ];
diff --git a/pkgs/development/python-modules/pybullet/default.nix b/pkgs/development/python-modules/pybullet/default.nix
index 944278ce3c2..5a1d8d370c1 100644
--- a/pkgs/development/python-modules/pybullet/default.nix
+++ b/pkgs/development/python-modules/pybullet/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "pybullet";
-  version = "2.4.8";
+  version = "2.4.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0b6dkrac5zydxqfrf827xhamsimychrn77dsfnz1kf7c1crlwcw9";
+    sha256 = "bcb5aaca2b8adf94a04fd5206eea113ddc1993c9f13ab39f4a37e98f92b6d7db";
   };
 
   buildInputs = [
diff --git a/pkgs/development/python-modules/pygal/default.nix b/pkgs/development/python-modules/pygal/default.nix
index b0d533f5d68..a3d6f6e4c21 100644
--- a/pkgs/development/python-modules/pygal/default.nix
+++ b/pkgs/development/python-modules/pygal/default.nix
@@ -41,6 +41,10 @@ buildPythonPackage rec {
     export LANG=en_US.UTF-8
   '';
 
+  postPatch = ''
+    substituteInPlace setup.cfg --replace "[pytest]" "[tool:pytest]"
+  '';
+
   propagatedBuildInputs = [ cairosvg tinycss cssselect ]
     ++ stdenv.lib.optionals (!isPyPy) [ lxml ];
 
diff --git a/pkgs/development/python-modules/pygame/default.nix b/pkgs/development/python-modules/pygame/default.nix
index 893b251f7b5..b9c45ce8967 100644
--- a/pkgs/development/python-modules/pygame/default.nix
+++ b/pkgs/development/python-modules/pygame/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "pygame";
-  version = "1.9.5";
+  version = "1.9.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d15e7238015095a12c19379565a66285e989fdcb3807ec360b27338cd8bdaf05";
+    sha256 = "301c6428c0880ecd4a9e3951b80e539c33863b6ff356a443db1758de4f297957";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/python-modules/pyro-ppl/default.nix b/pkgs/development/python-modules/pyro-ppl/default.nix
index 5490cd4baa7..f70f10da41a 100644
--- a/pkgs/development/python-modules/pyro-ppl/default.nix
+++ b/pkgs/development/python-modules/pyro-ppl/default.nix
@@ -1,12 +1,12 @@
 { buildPythonPackage, fetchPypi, lib, pytorch, contextlib2
 , graphviz, networkx, six, opt-einsum, tqdm }:
 buildPythonPackage rec {
-  version = "0.3.2";
+  version = "0.3.3";
   pname = "pyro-ppl";
 
   src = fetchPypi {
     inherit version pname;
-    sha256 = "f00db7e7747e016479ef65e3f00115d66a4200e59914f016d50e4d3e32bc94b0";
+    sha256 = "e980e2aa5a029e2f133d422a9154a21c9cca96c417c230ddde858e41aa43687b";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/pyroute2/default.nix b/pkgs/development/python-modules/pyroute2/default.nix
index 1887020fd0f..d99a703b173 100644
--- a/pkgs/development/python-modules/pyroute2/default.nix
+++ b/pkgs/development/python-modules/pyroute2/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "pyroute2";
-  version = "0.5.5";
+  version = "0.5.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ad679a91d453fe8426c4076d0da3a67265e5ccfe641879d75c9bc7660d075dfa";
+    sha256 = "deae0e6191a04c3ee213c6fae6ed779602ef5da5ca5e2fa533f27bc04326bfbe";
   };
 
   # requires root priviledges
diff --git a/pkgs/development/python-modules/pysonos/default.nix b/pkgs/development/python-modules/pysonos/default.nix
index 7e9414d5207..ced2906486a 100644
--- a/pkgs/development/python-modules/pysonos/default.nix
+++ b/pkgs/development/python-modules/pysonos/default.nix
@@ -13,13 +13,13 @@
 
 buildPythonPackage rec {
   pname = "pysonos";
-  version = "0.0.13";
+  version = "0.0.14";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0azkbd20qdzdilv5pi4qngw7pjjcsv269dim7xh3qv7s9bp0xik8";
+    sha256 = "6ebab661eb3ff9f814139924c18a87d0b1cab8a6af98d323e2b1ee313ed856c9";
   };
 
   propagatedBuildInputs = [ xmltodict requests ifaddr ];
diff --git a/pkgs/development/python-modules/pyspark/default.nix b/pkgs/development/python-modules/pyspark/default.nix
index 7c35ffda885..45c84d16753 100644
--- a/pkgs/development/python-modules/pyspark/default.nix
+++ b/pkgs/development/python-modules/pyspark/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "pyspark";
-  version = "2.4.2";
+  version = "2.4.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5ab07ed12c3c9035bfaad93921887736abf89130130b38de7dfa985e50542438";
+    sha256 = "6839718ce9f779e81153d8a14a843a5c4b2d5e6574f3c916aec241022d717cb2";
   };
 
   # pypandoc is broken with pandoc2, so we just lose docs.
diff --git a/pkgs/development/python-modules/python-dotenv/default.nix b/pkgs/development/python-modules/python-dotenv/default.nix
index 37c7d0dae68..b3a9d666262 100644
--- a/pkgs/development/python-modules/python-dotenv/default.nix
+++ b/pkgs/development/python-modules/python-dotenv/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "python-dotenv";
-  version = "0.10.1";
+  version = "0.10.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1q4sp6ppjiqlsz3h43q9iya4n3qkhx6ng16bcbacfxdyrp9xvcf9";
+    sha256 = "6640acd76e6cab84648e4fec16c9d19de6700971f9d91d045e7120622167bfda";
   };
 
   checkInputs = [ click ipython ];
diff --git a/pkgs/development/python-modules/python-rapidjson/default.nix b/pkgs/development/python-modules/python-rapidjson/default.nix
index 2b55d975ed3..07cbffad1f8 100644
--- a/pkgs/development/python-modules/python-rapidjson/default.nix
+++ b/pkgs/development/python-modules/python-rapidjson/default.nix
@@ -8,13 +8,13 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.7.0";
+  version = "0.7.1";
   pname = "python-rapidjson";
   disabled = pythonOlder "3.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d9c1411b25600ea65bb534ad75bf4ab6efd9627abd86872f0e5453ff42220d06";
+    sha256 = "3ea01520ebe28d270c79120a836d251fbb2187227695461a310fe0293f348b2d";
   };
 
   LC_ALL="en_US.utf-8";
diff --git a/pkgs/development/python-modules/pytools/default.nix b/pkgs/development/python-modules/pytools/default.nix
index 37bfee1d246..2de5b21d86f 100644
--- a/pkgs/development/python-modules/pytools/default.nix
+++ b/pkgs/development/python-modules/pytools/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "pytools";
-  version = "2019.1";
+  version = "2019.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f6972030e6c97089e49b832fd1f4e7959aee89bb6db929aaa3bde2553d78872b";
+    sha256 = "ce2d702ae4ef10a70197b00b93141461140d00578f2a862fa946ca1446a300db";
   };
 
   checkInputs = [ pytest ];
diff --git a/pkgs/development/python-modules/qtconsole/default.nix b/pkgs/development/python-modules/qtconsole/default.nix
index 2912ef213c2..6e3c25ef0dd 100644
--- a/pkgs/development/python-modules/qtconsole/default.nix
+++ b/pkgs/development/python-modules/qtconsole/default.nix
@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "qtconsole";
-  version = "4.4.4";
+  version = "4.5.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1qqyk5wlaps1m2hb5n2q1gynw2ayqn31dvxwwni4450ygf65arx6";
+    sha256 = "4af84facdd6f00a6b9b2927255f717bb23ae4b7a20ba1d9ef0a5a5a8dbe01ae2";
   };
 
   checkInputs = [ nose ] ++ lib.optionals isPy27 [mock];
diff --git a/pkgs/development/python-modules/reikna/default.nix b/pkgs/development/python-modules/reikna/default.nix
index 2e828a2a8e8..6a7cbdcc5af 100644
--- a/pkgs/development/python-modules/reikna/default.nix
+++ b/pkgs/development/python-modules/reikna/default.nix
@@ -13,11 +13,11 @@
 
 buildPythonPackage rec {
   pname = "reikna";
-  version = "0.7.2";
+  version = "0.7.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "c52f5ae13e35284feda8f6b67c0d6223c02c0292b1495969cf7a42f547b3fc18";
+    sha256 = "52bbce24fa1fd7bb950d38ce9b60f497dd00ac6b26688d80ab9bce709f063e71";
   };
 
   checkInputs = [ sphinx pytestcov pytest ];
diff --git a/pkgs/development/python-modules/reportlab/default.nix b/pkgs/development/python-modules/reportlab/default.nix
index 08800552607..eba47a3b2d1 100644
--- a/pkgs/development/python-modules/reportlab/default.nix
+++ b/pkgs/development/python-modules/reportlab/default.nix
@@ -11,11 +11,11 @@ let
   ft = freetype.overrideAttrs (oldArgs: { dontDisableStatic = true; });
 in buildPythonPackage rec {
   pname = "reportlab";
-  version = "3.5.20";
+  version = "3.5.21";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "06l7jfax1izvbddmmjw9xpyb7iy4n99v3chyv75d9djaklnqs93v";
+    sha256 = "08e6e63a4502d3a00062ba9ff9669f95577fbdb1a5f8c6cdb1230c5ee295273a";
   };
 
   checkInputs = [ glibcLocales ];
diff --git a/pkgs/development/python-modules/rfc3986/default.nix b/pkgs/development/python-modules/rfc3986/default.nix
index bc36e5cba80..eda1be2c110 100644
--- a/pkgs/development/python-modules/rfc3986/default.nix
+++ b/pkgs/development/python-modules/rfc3986/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "rfc3986";
-  version = "1.3.1";
+  version = "1.3.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1jprl2zm3pw2rfbda9rhg3v5bm8q36b8c9i4k8znimlf1mv8bcic";
+    sha256 = "0344d0bd428126ce554e7ca2b61787b6a28d2bbd19fc70ed2dd85efe31176405";
   };
 
   checkInputs = [ pytest ];
diff --git a/pkgs/development/python-modules/ruamel_yaml/default.nix b/pkgs/development/python-modules/ruamel_yaml/default.nix
index 01dcdb7104b..a4ac86302cf 100644
--- a/pkgs/development/python-modules/ruamel_yaml/default.nix
+++ b/pkgs/development/python-modules/ruamel_yaml/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "ruamel.yaml";
-  version = "0.15.94";
+  version = "0.15.96";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0939bcb399ad037ef903d74ccf2f8a074f06683bc89133ad19305067d34487c8";
+    sha256 = "343ace5ffbab036536a3da65e4cfd31b8292388a389f6305744984581a479b2a";
   };
 
   # Tests cannot load the module to test
diff --git a/pkgs/development/python-modules/scipy/default.nix b/pkgs/development/python-modules/scipy/default.nix
index af6dbeaa5e1..a69ab0d27a3 100644
--- a/pkgs/development/python-modules/scipy/default.nix
+++ b/pkgs/development/python-modules/scipy/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "scipy";
-  version = "1.2.1";
+  version = "1.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e085d1babcb419bbe58e2e805ac61924dac4ca45a07c9fa081144739e500aa3c";
+    sha256 = "c3bb4bd2aca82fb498247deeac12265921fe231502a6bc6edea3ee7fe6c40a7a";
   };
 
   checkInputs = [ nose pytest ];
diff --git a/pkgs/development/python-modules/sharedmem/default.nix b/pkgs/development/python-modules/sharedmem/default.nix
index 60c91b64109..d3222ac7d14 100644
--- a/pkgs/development/python-modules/sharedmem/default.nix
+++ b/pkgs/development/python-modules/sharedmem/default.nix
@@ -3,11 +3,11 @@
 buildPythonPackage rec {
 
   pname = "sharedmem";
-  version = "0.3.5";
+  version = "0.3.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1wr438m1jmcj6ccskzm6pchv6ldx7031h040adadjmkivz5rry41";
+    sha256 = "c351ab3f6a4fe9fe0c692ab6a8c88013e625845b31a168ff12d16254ed4154d5";
   };
 
   propagatedBuildInputs = [ numpy ];
diff --git a/pkgs/development/python-modules/snapcast/default.nix b/pkgs/development/python-modules/snapcast/default.nix
index bb137541791..1e008d96497 100644
--- a/pkgs/development/python-modules/snapcast/default.nix
+++ b/pkgs/development/python-modules/snapcast/default.nix
@@ -3,13 +3,13 @@
 
 buildPythonPackage rec {
   pname = "snapcast";
-  version = "2.0.9";
+  version = "2.0.10";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0hlfcg0qdfavjzhxz4v2spjkj6440a1254wrncfkfkyff6rv9x3s";
+    sha256 = "2a862a57ca65aa11cf010a19cdfee37e5728d486ee92684b00233442613b5120";
   };
 
   checkInputs = [ pytest ];
diff --git a/pkgs/development/python-modules/sopel/default.nix b/pkgs/development/python-modules/sopel/default.nix
index f4e699adcc8..b37c397488d 100644
--- a/pkgs/development/python-modules/sopel/default.nix
+++ b/pkgs/development/python-modules/sopel/default.nix
@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "sopel";
-  version = "6.6.6";
+  version = "6.6.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "dfb6d6c349cbdd463736e4be781cc005efeb1be91dbdc60cc76fda7cad142def";
+    sha256 = "c32aa69ba8a9ae55daf6dbc265d7f56fe6026edef3bb81aeea7912b7b6b9f5b7";
   };
 
   buildInputs = [ pytest ];
diff --git a/pkgs/development/python-modules/sphinxcontrib-websupport/default.nix b/pkgs/development/python-modules/sphinxcontrib-websupport/default.nix
index cb3d76e6a74..d4f17171e3b 100644
--- a/pkgs/development/python-modules/sphinxcontrib-websupport/default.nix
+++ b/pkgs/development/python-modules/sphinxcontrib-websupport/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "sphinxcontrib-websupport";
-  version = "1.1.0";
+  version = "1.1.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9de47f375baf1ea07cdb3436ff39d7a9c76042c10a769c52353ec46e4e8fc3b9";
+    sha256 = "1501befb0fdf1d1c29a800fdbf4ef5dc5369377300ddbdd16d2cd40e54c6eefc";
   };
 
   propagatedBuildInputs = [ six ];
diff --git a/pkgs/development/python-modules/sqlmap/default.nix b/pkgs/development/python-modules/sqlmap/default.nix
index d7a7d45785e..40eefc1db56 100644
--- a/pkgs/development/python-modules/sqlmap/default.nix
+++ b/pkgs/development/python-modules/sqlmap/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "sqlmap";
-  version = "1.3.4";
+  version = "1.3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "894584fdb8d0e25e9f9ac0da20058e23c27d5ca55904cc0326e1a84101beef32";
+    sha256 = "84e0da1a3d846df2f7c886540828f374b357924207e915c8885e0472acdf68dd";
   };
 
   # No tests in archive
diff --git a/pkgs/development/python-modules/sqlobject/default.nix b/pkgs/development/python-modules/sqlobject/default.nix
index 86fcb6eaaab..187f06c6ad9 100644
--- a/pkgs/development/python-modules/sqlobject/default.nix
+++ b/pkgs/development/python-modules/sqlobject/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "SQLObject";
-  version = "3.7.1";
+  version = "3.7.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0f0a5d9430c40b9fa5065e210a7fd3aaabb0713313e72b1b7b7dc4c7d62e43d2";
+    sha256 = "8aee27279231bae59e95b299e253b27ac2d78934989f4ccbe317c7b25faab6de";
   };
 
   checkInputs = [ pytest ];
diff --git a/pkgs/development/python-modules/subprocess32/default.nix b/pkgs/development/python-modules/subprocess32/default.nix
index ccb73550a3f..c77a41c3eb0 100644
--- a/pkgs/development/python-modules/subprocess32/default.nix
+++ b/pkgs/development/python-modules/subprocess32/default.nix
@@ -9,12 +9,12 @@
 
 buildPythonPackage rec {
   pname = "subprocess32";
-  version = "3.5.3";
+  version = "3.5.4";
   disabled = isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6bc82992316eef3ccff319b5033809801c0c3372709c5f6985299c88ac7225c3";
+    sha256 = "eb2937c80497978d181efa1b839ec2d9622cf9600a039a79d0e108d1f9aec79d";
   };
 
   buildInputs = [ bash ];
diff --git a/pkgs/development/python-modules/tables/default.nix b/pkgs/development/python-modules/tables/default.nix
index b042108d088..7b1b4f7c36f 100644
--- a/pkgs/development/python-modules/tables/default.nix
+++ b/pkgs/development/python-modules/tables/default.nix
@@ -1,17 +1,17 @@
 { stdenv, fetchPypi, python, buildPythonPackage
-, cython, bzip2, lzo, numpy, numexpr, hdf5, six, c-blosc }:
+, cython, bzip2, lzo, numpy, numexpr, hdf5, six, c-blosc, mock }:
 
 buildPythonPackage rec {
-  version = "3.4.4";
+  version = "3.5.2";
   pname = "tables";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "bdc5c073712af2a43babd139c4855fc99496bb2c3f3f5d1b4770a985e6f9ce29";
+    sha256 = "1hikrki0hx94ass31pn0jyz9iy0zhnkjacfk86m21cxsc8if685j";
   };
 
   buildInputs = [ hdf5 cython bzip2 lzo c-blosc ];
-  propagatedBuildInputs = [ numpy numexpr six ];
+  propagatedBuildInputs = [ numpy numexpr six mock ];
 
   # The setup script complains about missing run-paths, but they are
   # actually set.
diff --git a/pkgs/development/python-modules/telethon-session-sqlalchemy/default.nix b/pkgs/development/python-modules/telethon-session-sqlalchemy/default.nix
index c792136cb4f..b74fe9dc0de 100644
--- a/pkgs/development/python-modules/telethon-session-sqlalchemy/default.nix
+++ b/pkgs/development/python-modules/telethon-session-sqlalchemy/default.nix
@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "telethon-session-sqlalchemy";
-  version = "0.2.14";
+  version = "0.2.15";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "94aaf98afc051b4e167783f3d972bd9b51ab736a1e45df100bf52984e53eebac";
+    sha256 = "2ba603d95d5be6ddecd8ecaeaffba00b75b49dd80eb77f6228dd7b793ca67fd2";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/tqdm/default.nix b/pkgs/development/python-modules/tqdm/default.nix
index cc0745afef4..c5701902e08 100644
--- a/pkgs/development/python-modules/tqdm/default.nix
+++ b/pkgs/development/python-modules/tqdm/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "tqdm";
-  version = "4.31.1";
+  version = "4.32.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e22977e3ebe961f72362f6ddfb9197cc531c9737aaf5f607ef09740c849ecd05";
+    sha256 = "0a860bf2683fdbb4812fe539a6c22ea3f1777843ea985cb8c3807db448a0f7ab";
   };
 
   buildInputs = [ nose coverage glibcLocales flake8 ];
diff --git a/pkgs/development/python-modules/uncompyle6/default.nix b/pkgs/development/python-modules/uncompyle6/default.nix
index bb9c874d9a1..f300ed72751 100644
--- a/pkgs/development/python-modules/uncompyle6/default.nix
+++ b/pkgs/development/python-modules/uncompyle6/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "uncompyle6";
-  version = "3.3.2";
+  version = "3.3.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "096k1hipxxnsra5k86v6sm7bk1g0kb1f75yb44nvgf566kd6p119";
+    sha256 = "9c492a560ff1c8713f0947cfc3ab755c368e26421d13087cd5b6c01b1529ea5b";
   };
 
   checkInputs = [ nose pytest hypothesis six ];
diff --git a/pkgs/development/python-modules/urllib3/default.nix b/pkgs/development/python-modules/urllib3/default.nix
index 4546207b08c..d951e436480 100644
--- a/pkgs/development/python-modules/urllib3/default.nix
+++ b/pkgs/development/python-modules/urllib3/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "urllib3";
-  version = "1.24.2";
+  version = "1.24.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9a247273df709c4fedb38c711e44292304f73f39ab01beda9f6b9fc375669ac3";
+    sha256 = "2393a695cd12afedd0dcb26fe5d50d0cf248e5a66f75dbd89a3d4eb333a61af4";
   };
 
   NOSE_EXCLUDE = stdenv.lib.concatStringsSep "," [
diff --git a/pkgs/development/python-modules/virtual-display/default.nix b/pkgs/development/python-modules/virtual-display/default.nix
index 262d2a5d33a..01efc61584f 100644
--- a/pkgs/development/python-modules/virtual-display/default.nix
+++ b/pkgs/development/python-modules/virtual-display/default.nix
@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "PyVirtualDisplay";
-  version = "0.2.1";
+  version = "0.2.3";
 
   propagatedBuildInputs = [ EasyProcess ];
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "012883851a992f9c53f0dc6a512765a95cf241bdb734af79e6bdfef95c6e9982";
+    sha256 = "658d03ea2d6727cbe70c30af71e9014d3d39114a3c50bd661b75aad188fdd3aa";
   };
 
   # requires X server
diff --git a/pkgs/development/python-modules/vmprof/default.nix b/pkgs/development/python-modules/vmprof/default.nix
index a889613140d..25cd5b9a90d 100644
--- a/pkgs/development/python-modules/vmprof/default.nix
+++ b/pkgs/development/python-modules/vmprof/default.nix
@@ -6,12 +6,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.4.12";
+  version = "0.4.13";
   pname = "vmprof";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d6fa566512de1e17c9b585feae6e6997119e0d43c41c8461a9a2e8a8276618a4";
+    sha256 = "b6121f3d989fe48c2fb7242acded5f1e2e86d25d05d73c41257f236fd9badb2c";
   };
 
   propagatedBuildInputs = [ requests six];
diff --git a/pkgs/development/python-modules/warlock/default.nix b/pkgs/development/python-modules/warlock/default.nix
index 46a5bd533b2..bc298b2794d 100644
--- a/pkgs/development/python-modules/warlock/default.nix
+++ b/pkgs/development/python-modules/warlock/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "warlock";
-  version = "1.3.0";
+  version = "1.3.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "01kajxvjp5n1p42n1kvv7rfcj2yyr44zmmzk48pywryfixr3yh6p";
+    sha256 = "a093c4d04b42b7907f69086e476a766b7639dca50d95edc83aef6aeab9db2090";
   };
 
   propagatedBuildInputs = [ six jsonpatch jsonschema jsonpointer ];
diff --git a/pkgs/development/python-modules/werkzeug/default.nix b/pkgs/development/python-modules/werkzeug/default.nix
index cb46e498db7..483926ef30b 100644
--- a/pkgs/development/python-modules/werkzeug/default.nix
+++ b/pkgs/development/python-modules/werkzeug/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "Werkzeug";
-  version = "0.15.2";
+  version = "0.15.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0a73e8bb2ff2feecfc5d56e6f458f5b99290ef34f565ffb2665801ff7de6af7a";
+    sha256 = "a0b915f0815982fb2a09161cb8f31708052d0951c3ba433ccc5e1aa276507ca6";
   };
 
   propagatedBuildInputs = [ itsdangerous ];
diff --git a/pkgs/development/python-modules/wheel/default.nix b/pkgs/development/python-modules/wheel/default.nix
index cfe66ce63d7..d7814984060 100644
--- a/pkgs/development/python-modules/wheel/default.nix
+++ b/pkgs/development/python-modules/wheel/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "wheel";
-  version = "0.33.1";
+  version = "0.33.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "66a8fd76f28977bb664b098372daef2b27f60dc4d1688cfab7b37a09448f0e9d";
+    sha256 = "62fcfa03d45b5b722539ccbc07b190e4bfff4bb9e3a4d470dd9f6a0981002565";
   };
 
   checkInputs = [ pytest pytestcov coverage ];
diff --git a/pkgs/development/python-modules/wxPython/4.0.nix b/pkgs/development/python-modules/wxPython/4.0.nix
index c59e91ad3ea..c953fe9fe1e 100644
--- a/pkgs/development/python-modules/wxPython/4.0.nix
+++ b/pkgs/development/python-modules/wxPython/4.0.nix
@@ -15,11 +15,11 @@
 
 buildPythonPackage rec {
   pname = "wxPython";
-  version = "4.0.4";
+  version = "4.0.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0d9ef4260cb2f3e23ed9dcf6baa905ba585ac7d631613cddc299c4c83463ae29";
+    sha256 = "35cc8ae9dd5246e2c9861bb796026bbcb9fb083e4d49650f776622171ecdab37";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/tools/backup/ddar/default.nix b/pkgs/tools/backup/ddar/default.nix
index de501659b08..4c8d1a28c27 100644
--- a/pkgs/tools/backup/ddar/default.nix
+++ b/pkgs/tools/backup/ddar/default.nix
@@ -1,4 +1,4 @@
-{ lib, python2, fetchFromGitHub, roundup }:
+{ lib, python2, fetchFromGitHub, roundup, ncurses }:
 
 python2.pkgs.buildPythonApplication rec {
   pname = "ddar";
@@ -26,7 +26,7 @@ python2.pkgs.buildPythonApplication rec {
   nativeBuildInputs = with python2.pkgs; [ protobuf.protobuf ];
   propagatedBuildInputs = with python2.pkgs; [ protobuf ];
 
-  checkInputs = [ roundup ];
+  checkInputs = [ roundup ncurses ];
 
   checkPhase = ''
     roundup t/basic-test.sh
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index d8a127c8d74..1c442226c1d 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -3245,7 +3245,7 @@ in {
 
   locustio = callPackage ../development/python-modules/locustio { };
 
-  llvmlite = callPackage ../development/python-modules/llvmlite { llvm = pkgs.llvm_6; };
+  llvmlite = callPackage ../development/python-modules/llvmlite { llvm = pkgs.llvm_8; };
 
   lockfile = callPackage ../development/python-modules/lockfile { };
 
@@ -4356,7 +4356,16 @@ in {
 
   scapy = callPackage ../development/python-modules/scapy { };
 
-  scipy = callPackage ../development/python-modules/scipy { };
+  scipy = let
+    scipy_ = callPackage ../development/python-modules/scipy { };
+    scipy_1_2 = scipy_.overridePythonAttrs(oldAttrs: {
+      version = "1.2.1";
+      src = oldAttrs.src.override {
+        inherit version;
+        sha256 = "e085d1babcb419bbe58e2e805ac61924dac4ca45a07c9fa081144739e500aa3c";
+      };
+    });
+  in if pythonOlder "3.5" then scipy_1_2 else scipy_;
 
   scikitimage = callPackage ../development/python-modules/scikit-image { };