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| author | Sandro Jäckel <sandro.jaeckel@gmail.com> | 2021-07-26 01:41:43 +0200 |
|---|---|---|
| committer | Sandro Jäckel <sandro.jaeckel@gmail.com> | 2021-07-27 11:53:51 +0200 |
| commit | 108ad942fbd04abd08547864697825d1227a155f (patch) | |
| tree | f23ef724c9f5e32cee7d605a66bf61fbcad6ad04 /pkgs | |
| parent | 8c90a87418911db52935344e8e79d089ddbca190 (diff) | |
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mrbayes: modernize
Diffstat (limited to 'pkgs')
| -rw-r--r-- | pkgs/applications/science/biology/mrbayes/builder.sh | 9 | ||||
| -rw-r--r-- | pkgs/applications/science/biology/mrbayes/default.nix | 23 |
2 files changed, 12 insertions, 20 deletions
diff --git a/pkgs/applications/science/biology/mrbayes/builder.sh b/pkgs/applications/science/biology/mrbayes/builder.sh deleted file mode 100644 index 5b3a54946fc..00000000000 --- a/pkgs/applications/science/biology/mrbayes/builder.sh +++ /dev/null @@ -1,9 +0,0 @@ -# builder for mrbayes - note: only builds on Unix - -source $stdenv/setup - -tar xvfz $src -cd mrbayes-* -make -mkdir -p $out/bin -cp -v mb $out/bin diff --git a/pkgs/applications/science/biology/mrbayes/default.nix b/pkgs/applications/science/biology/mrbayes/default.nix index 9acfea1a146..a9eb099780c 100644 --- a/pkgs/applications/science/biology/mrbayes/default.nix +++ b/pkgs/applications/science/biology/mrbayes/default.nix @@ -1,18 +1,18 @@ -{lib, stdenv, fetchurl, readline}: +{ lib, stdenv, fetchFromGitHub, readline }: stdenv.mkDerivation rec { - # FIXME: replace Makefile so we can build MPI & MAC support + pname = "mrbayes"; + version = "3.2.7"; - name = "mrbayes-3.1.2"; - src = fetchurl { - url = "mirror://sourceforge/mrbayes/${name}.tar.gz"; - sha256 = "1x7j8ca5wjrqrxmcpvd375ydm3s2pbkzykv8xfhg1jc037g560n6"; + src = fetchFromGitHub { + owner = "NBISweden"; + repo = "MrBayes"; + rev = "v${version}"; + sha256 = "sha256-J0r4CxxQuZ3exvfCMRbLmyEd8ROaXNQG4afwiAs6H+M="; }; - builder = ./builder.sh; - buildInputs = [readline]; meta = with lib; { - description = "Bayesian Inference of Phylogeny"; + description = "Bayesian Inference of Phylogeny"; longDescription = '' Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is @@ -22,8 +22,9 @@ stdenv.mkDerivation rec { MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. ''; - license = licenses.gpl2; - homepage = "http://mrbayes.csit.fsu.edu/"; + maintainers = with maintainers; [ ]; + license = licenses.gpl2Plus; + homepage = "https://nbisweden.github.io/MrBayes/"; platforms = platforms.linux; }; } |