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| author | Luka Blaskovic <lblasc@tvbeat.com> | 2020-07-21 11:02:37 +0000 |
|---|---|---|
| committer | Luka Blaskovic <lblasc@tvbeat.com> | 2020-11-05 06:42:38 +0000 |
| commit | 0601f34356dadc32a3fa82a2c8f694838f8d25a8 (patch) | |
| tree | 7de936e4dc399ee23ff0e891326dc2178fbeeb5a /pkgs/development/r-modules | |
| parent | f838052d4f8c63db19e7b066c37dd0964ebc6d9b (diff) | |
| download | nixpkgs-0601f34356dadc32a3fa82a2c8f694838f8d25a8.tar nixpkgs-0601f34356dadc32a3fa82a2c8f694838f8d25a8.tar.gz nixpkgs-0601f34356dadc32a3fa82a2c8f694838f8d25a8.tar.bz2 nixpkgs-0601f34356dadc32a3fa82a2c8f694838f8d25a8.tar.lz nixpkgs-0601f34356dadc32a3fa82a2c8f694838f8d25a8.tar.xz nixpkgs-0601f34356dadc32a3fa82a2c8f694838f8d25a8.tar.zst nixpkgs-0601f34356dadc32a3fa82a2c8f694838f8d25a8.zip | |
R: remove qtbase.patch and fix few CRAN packages
Diffstat (limited to 'pkgs/development/r-modules')
| -rw-r--r-- | pkgs/development/r-modules/default.nix | 14 | ||||
| -rw-r--r-- | pkgs/development/r-modules/patches/qtbase.patch | 13 |
2 files changed, 13 insertions, 14 deletions
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index dad01337f4a..ad214d63f7b 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -279,6 +279,7 @@ let mwaved = [ pkgs.fftw.dev ]; ncdf4 = [ pkgs.netcdf ]; nloptr = [ pkgs.nlopt pkgs.pkgconfig ]; + n1qn1 = [ pkgs.gfortran ]; odbc = [ pkgs.unixODBC ]; pander = [ pkgs.pandoc pkgs.which ]; pbdMPI = [ pkgs.openmpi ]; @@ -412,6 +413,11 @@ let systemfonts = [ pkgs.pkgconfig ]; tesseract = [ pkgs.pkgconfig ]; Cairo = [ pkgs.pkgconfig ]; + CLVTools = [ pkgs.gsl ]; + JMcmprsk = [ pkgs.gsl ]; + mashr = [ pkgs.gsl ]; + hadron = [ pkgs.gsl ]; + AMOUNTAIN = [ pkgs.gsl ]; Rsymphony = [ pkgs.pkgconfig pkgs.doxygen pkgs.graphviz pkgs.subversion ]; tcltk2 = [ pkgs.tcl pkgs.tk ]; tikzDevice = [ pkgs.which pkgs.texlive.combined.scheme-medium ]; @@ -799,7 +805,7 @@ let openssl = old.openssl.overrideDerivation (attrs: { preConfigure = '' patchShebangs configure - ''; + ''; PKGCONFIG_CFLAGS = "-I${pkgs.openssl.dev}/include"; PKGCONFIG_LIBS = "-Wl,-rpath,${pkgs.openssl.out}/lib -L${pkgs.openssl.out}/lib -lssl -lcrypto"; }); @@ -854,6 +860,12 @@ let ''; }); + libgeos = old.libgeos.overrideDerivation (attrs: { + preConfigure = '' + patchShebangs configure + ''; + }); + protolite = old.protolite.overrideDerivation (attrs: { preConfigure = '' patchShebangs configure diff --git a/pkgs/development/r-modules/patches/qtbase.patch b/pkgs/development/r-modules/patches/qtbase.patch deleted file mode 100644 index 14427b72630..00000000000 --- a/pkgs/development/r-modules/patches/qtbase.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff -ru -x '*~' qtbase_orig/src/Makefile qtbase/src/Makefile ---- qtbase_orig/src/Makefile 2012-03-03 03:57:47.000000000 +0900 -+++ qtbase/src/Makefile 2014-11-01 23:06:51.383876323 +0900 -@@ -10,6 +10,9 @@ - -DR_INCLUDES=${R_INCLUDE_DIR} \ - -DCMAKE_INSTALL_PREFIX=../src; \ - make install -+# I could not control RPATH via CMake. HELP WANTED! -+ patchelf --set-rpath ${CMAKE_LIBRARY_PATH} qtbase.so -+ find ../inst/local/ -executable -type f -print0 | xargs -0 patchelf --set-rpath ${CMAKE_LIBRARY_PATH} - - clean: - rm -rf ../kdebindings-build |