cudatoolkit: don't move $out/include to $out/usr_include

This effectively reverts 86c283824f76d849acbe6
("If cuda headers are presented to nix [...]") and all the following
workarounds that was added due to that commit.

As far as I can tell[1] this hack isn't needed anymore. And moving
includes to $out/usr_include causes pain for cudatoolkit users, so
better get rid of it.

In patches that did more than the $out/usr_include workaround, I only
changed the line back to $out/include instead of re-generating the
patches and fully removing the changed line.

[1]: I build tested blender and caffe, and temporarily added
recurseIntoAttrs to rPackages and haskellPackages so that nox-review
could get proper coverage. However, many of the packages do not build
even before this patch. I also built CUDA samples with cudatoolkit7
that ran fine.

6 files changed, 3 insertions, 40 deletions

diff --git a/pkgs/development/r-modules/patches/CARramps.patch b/pkgs/development/r-modules/patches/CARramps.patch
index 901ab1f69b7..add01b28fc1 100644
--- a/pkgs/development/r-modules/patches/CARramps.patch
+++ b/pkgs/development/r-modules/patches/CARramps.patch
@@ -1,15 +1,3 @@
-diff -ru -x '*~' CARramps_orig/configure CARramps/configure
---- CARramps_orig/configure	2011-12-01 22:27:06.000000000 +0900
-+++ CARramps/configure	2014-10-25 14:56:04.599337748 +0900
-@@ -2395,7 +2395,7 @@
- 
- 
- NCFLAGS="-arch=sm_13 -O2"
--CUDA_INC=${CUDA_HOME}/include
-+CUDA_INC=${CUDA_HOME}/usr_include
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for CUDA headers" >&5
- $as_echo_n "checking for CUDA headers... " >&6; }
- as_ac_File=`$as_echo "ac_cv_file_${CUDA_INC}/cublas.h" | $as_tr_sh`
 diff -ru -x '*~' CARramps_orig/src/combo1colForR1Q_d.cu CARramps/src/combo1colForR1Q_d.cu
 --- CARramps_orig/src/combo1colForR1Q_d.cu	2011-12-01 22:27:06.000000000 +0900
 +++ CARramps/src/combo1colForR1Q_d.cu	2014-10-25 14:59:06.869299163 +0900
diff --git a/pkgs/development/r-modules/patches/WideLM.patch b/pkgs/development/r-modules/patches/WideLM.patch
index f86d66bf746..02bbfb7e0da 100644
--- a/pkgs/development/r-modules/patches/WideLM.patch
+++ b/pkgs/development/r-modules/patches/WideLM.patch
@@ -6,7 +6,7 @@ diff -ru -x '*~' WideLM_orig/src/Makefile.in WideLM/src/Makefile.in
  R_INCS := @R_INCL@ @RCPP_INCL@
  CC_ARGS := @CU_PARAMS@ -Xcompiler @R_CPIC@
 -CU_INCS := -I@CUDA_HOME@/include
-+CU_INCS := -I@CUDA_HOME@/usr_include
++CU_INCS := -I@CUDA_HOME@/include
  CU_ARCH := -gencode arch=compute_20,code=sm_20
  
  #linker options
diff --git a/pkgs/development/r-modules/patches/gputools.patch b/pkgs/development/r-modules/patches/gputools.patch
index 61cbcea9370..1eb0c8c33ca 100644
--- a/pkgs/development/r-modules/patches/gputools.patch
+++ b/pkgs/development/r-modules/patches/gputools.patch
@@ -5,7 +5,7 @@ diff -ru -x '*~' gputools_orig/src/Makefile gputools/src/Makefile
  
  R_HOME := $(shell R RHOME)
  
-+CUDA_INC := $(CUDA_HOME)/usr_include
++CUDA_INC := $(CUDA_HOME)/include
 +CUDA_LIB := $(CUDA_HOME)/lib
 +
  #compiler/preprocessor options
diff --git a/pkgs/development/r-modules/patches/iFes.patch b/pkgs/development/r-modules/patches/iFes.patch
deleted file mode 100644
index aca89b8d5a8..00000000000
--- a/pkgs/development/r-modules/patches/iFes.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff -u3 -r iFes_orig/src/config.mk iFes/src/config.mk
---- iFes_orig/src/config.mk	2014-12-09 14:19:58.000000000 +0300
-+++ iFes/src/config.mk	2015-02-19 22:47:24.426804174 +0300
-@@ -12,7 +12,7 @@
- endif
- 
- # set CUDA_INC to CUDA header dir on your system
--CUDA_INC := $(CUDA_HOME)/include
-+CUDA_INC := $(CUDA_HOME)/usr_include
- 
- ARCH := $(shell uname -m)
- 
-
diff --git a/pkgs/development/r-modules/patches/magma_cuda_include.patch b/pkgs/development/r-modules/patches/magma_cuda_include.patch
deleted file mode 100644
index 67552325ae9..00000000000
--- a/pkgs/development/r-modules/patches/magma_cuda_include.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -ru -x '*~' magma_orig/configure magma/configure
---- magma_orig/configure	2013-04-03 11:07:42.000000000 +0900
-+++ magma/configure	2014-10-18 21:58:48.745890187 +0900
-@@ -2377,7 +2377,7 @@
- 
- 
- NCFLAGS="-arch=sm_13 -O2 -DADD_"
--CUDA_INC=${CUDA_HOME}/include
-+CUDA_INC=${CUDA_HOME}/usr_include
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for CUDA headers" >&5
- $as_echo_n "checking for CUDA headers... " >&6; }
- as_ac_File=`$as_echo "ac_cv_file_${CUDA_INC}/cublas.h" | $as_tr_sh`
diff --git a/pkgs/development/r-modules/patches/rpud.patch b/pkgs/development/r-modules/patches/rpud.patch
index 45d20e6bd67..bb904b68989 100644
--- a/pkgs/development/r-modules/patches/rpud.patch
+++ b/pkgs/development/r-modules/patches/rpud.patch
@@ -18,7 +18,7 @@ diff -ru -x '*~' rpud_orig/src/Makefile.in rpud/src/Makefile.in
  
  #compiler/preprocessor options
 -INCS := -I@CUDA_HOME@/include
-+INCS := -I@CUDA_HOME@/usr_include
++INCS := -I@CUDA_HOME@/include
  PARAMS := -Xcompiler "@R_INCLUDE@ @CPICFLAGS@"
  
  #linker options