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author | Fabian Affolter <mail@fabian-affolter.ch> | 2021-03-05 20:52:11 +0100 |
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committer | Frederik Rietdijk <freddyrietdijk@fridh.nl> | 2021-03-06 08:48:21 +0100 |
commit | dd567e60461202f7aa09a814b24abbf18e9f0afb (patch) | |
tree | 5769c6d07266e28f30555a84cd403e8c75751f47 /pkgs/development/python-modules/pandas | |
parent | 9ea8a0fd1c6164dae07275ec56c103da3625865e (diff) | |
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python3Packages.pandas: 1.2.2 -> 1.2.3
Diffstat (limited to 'pkgs/development/python-modules/pandas')
-rw-r--r-- | pkgs/development/python-modules/pandas/default.nix | 76 | ||||
-rw-r--r-- | pkgs/development/python-modules/pandas/fix-tests.patch | 12 |
2 files changed, 41 insertions, 47 deletions
diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix index 63244618f5b..7fd551e192c 100644 --- a/pkgs/development/python-modules/pandas/default.nix +++ b/pkgs/development/python-modules/pandas/default.nix @@ -1,4 +1,5 @@ -{ lib, stdenv +{ lib +, stdenv , buildPythonPackage , fetchPypi , python @@ -8,37 +9,41 @@ , cython , dateutil , html5lib +, jinja2 , lxml , numexpr , openpyxl , pytz -, sqlalchemy , scipy +, sqlalchemy , tables , xlrd , xlwt -# Test Inputs +# Test inputs , glibcLocales , hypothesis , pytestCheckHook +, pytest-xdist +, pytest-asyncio +, XlsxWriter # Darwin inputs , runtimeShell -, libcxx ? null +, libcxx }: buildPythonPackage rec { pname = "pandas"; - version = "1.2.2"; + version = "1.2.3"; src = fetchPypi { inherit pname version; - sha256 = "14ed84b463e9b84c8ff9308a79b04bf591ae3122a376ee0f62c68a1bd917a773"; + sha256 = "078b4nncn6778ymmqn80j2q6n7fcs4d6bbaraar5nypgbaw10vyz"; }; - # See https://github.com/scipy/scipy/issues/13585 and https://github.com/pandas-dev/pandas/pull/40020 - patches = [ ./fix-tests.patch ]; nativeBuildInputs = [ cython ]; + buildInputs = lib.optional stdenv.isDarwin libcxx; + propagatedBuildInputs = [ beautifulsoup4 bottleneck @@ -55,58 +60,57 @@ buildPythonPackage rec { xlwt ]; - checkInputs = [ pytestCheckHook glibcLocales hypothesis ]; + checkInputs = [ + glibcLocales + hypothesis + jinja2 + pytest-asyncio + pytest-xdist + pytestCheckHook + XlsxWriter + ]; - # doesn't work with -Werror,-Wunused-command-line-argument + # Doesn't work with -Werror,-Wunused-command-line-argument # https://github.com/NixOS/nixpkgs/issues/39687 hardeningDisable = lib.optional stdenv.cc.isClang "strictoverflow"; - # Parallel Cythonization is broken in Python 3.8 on Darwin. Fixed in the next - # release. https://github.com/pandas-dev/pandas/pull/30862 - setupPyBuildFlags = lib.optionals (!(isPy38 && stdenv.isDarwin)) [ - # As suggested by - # https://pandas.pydata.org/pandas-docs/stable/development/contributing.html#creating-a-python-environment - "--parallel=$NIX_BUILD_CORES" - ]; + # For OSX, we need to add a dependency on libcxx, which provides + # `complex.h` and other libraries that pandas depends on to build. + postPatch = lib.optionalString stdenv.isDarwin '' + cpp_sdk="${libcxx}/include/c++/v1"; + echo "Adding $cpp_sdk to the setup.py common_include variable" + substituteInPlace setup.py \ + --replace "['pandas/src/klib', 'pandas/src']" \ + "['pandas/src/klib', 'pandas/src', '$cpp_sdk']" + ''; doCheck = !stdenv.isAarch64; # upstream doesn't test this architecture pytestFlagsArray = [ "--skip-slow" "--skip-network" + "--numprocesses" "0" ]; + disabledTests = [ - # since dateutil 0.6.0 the following fails: test_fallback_plural, test_ambiguous_flags, test_ambiguous_compat - # was supposed to be solved by https://github.com/dateutil/dateutil/issues/321, but is not the case - "test_fallback_plural" - "test_ambiguous_flags" - "test_ambiguous_compat" # Locale-related "test_names" "test_dt_accessor_datetime_name_accessors" "test_datetime_name_accessors" - # Can't import from test folder - "test_oo_optimizable" # Disable IO related tests because IO data is no longer distributed "io" - # KeyError Timestamp - "test_to_excel" - # ordering logic has changed - "numpy_ufuncs_other" - "order_without_freq" - # tries to import from pandas.tests post install + # Tries to import from pandas.tests post install "util_in_top_level" - # Fails with 1.0.5 - "test_constructor_list_frames" - "test_constructor_with_embedded_frames" - # tries to import compiled C extension locally + # Tries to import compiled C extension locally "test_missing_required_dependency" + # AssertionError with 1.2.3 + "test_from_coo" ] ++ lib.optionals stdenv.isDarwin [ "test_locale" "test_clipboard" ]; - # tests have relative paths, and need to reference compiled C extensions + # Tests have relative paths, and need to reference compiled C extensions # so change directory where `import .test` is able to be resolved preCheck = '' cd $out/${python.sitePackages}/pandas @@ -123,6 +127,8 @@ buildPythonPackage rec { export PATH=$(pwd):$PATH ''; + pythonImportsCheck = [ "pandas" ]; + meta = with lib; { # https://github.com/pandas-dev/pandas/issues/14866 # pandas devs are no longer testing i686 so safer to assume it's broken diff --git a/pkgs/development/python-modules/pandas/fix-tests.patch b/pkgs/development/python-modules/pandas/fix-tests.patch deleted file mode 100644 index 8051cfec39a..00000000000 --- a/pkgs/development/python-modules/pandas/fix-tests.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff --color -ur a/pandas/tests/arrays/sparse/test_array.py b/pandas/tests/arrays/sparse/test_array.py ---- a/pandas/tests/arrays/sparse/test_array.py 2020-12-07 12:42:08.000000000 +0100 -+++ b/pandas/tests/arrays/sparse/test_array.py 2021-02-27 21:48:16.483903149 +0100 -@@ -1188,7 +1188,7 @@ - row = [0, 3, 1, 0] - col = [0, 3, 1, 2] - data = [4, 5, 7, 9] -- sp_array = scipy.sparse.coo_matrix((data, (row, col))) -+ sp_array = scipy.sparse.coo_matrix((data, (row, col)), dtype="int") - result = pd.Series.sparse.from_coo(sp_array) - - index = pd.MultiIndex.from_arrays([[0, 0, 1, 3], [0, 2, 1, 3]]) |