Merge staging-next into staging

46 files changed, 202 insertions, 514 deletions

diff --git a/pkgs/development/libraries/alkimia/default.nix b/pkgs/development/libraries/alkimia/default.nix
index 6f4fd09015e..f98c8fa480e 100644
--- a/pkgs/development/libraries/alkimia/default.nix
+++ b/pkgs/development/libraries/alkimia/default.nix
@@ -1,19 +1,20 @@
 { mkDerivation, fetchurl, lib
-, extra-cmake-modules, doxygen, graphviz, qtbase, mpir
+, extra-cmake-modules, doxygen, graphviz, qtbase, qtwebkit, mpir
+, kdelibs4support, plasma-framework, knewstuff, kpackage
 }:
 
 mkDerivation rec {
   name = "alkimia-${version}";
-  version = "7.0.1";
+  version = "8.0.1";
 
   src = fetchurl {
-    url = "mirror://kde/stable/alkimia/${version}/src/${name}.tar.xz";
-    sha256 = "1fri76465058fgsyrmdrc3hj1javz4g10mfzqp5rsj7qncjr1i22";
+    url = "mirror://kde/stable/alkimia/${version}/${name}.tar.xz";
+    sha256 = "059i6vn36sdq5zn2vqzh4asvvgdgs7n478nk9phvb5gdys01fq7m";
   };
 
   nativeBuildInputs = [ extra-cmake-modules doxygen graphviz ];
 
-  buildInputs = [ qtbase ];
+  buildInputs = [ qtbase qtwebkit kdelibs4support plasma-framework knewstuff kpackage ];
   propagatedBuildInputs = [ mpir ];
 
   meta = {
diff --git a/pkgs/development/libraries/audio/rtmidi/default.nix b/pkgs/development/libraries/audio/rtmidi/default.nix
index 0f3f1fce42b..41bb9ca9f11 100644
--- a/pkgs/development/libraries/audio/rtmidi/default.nix
+++ b/pkgs/development/libraries/audio/rtmidi/default.nix
@@ -1,14 +1,14 @@
 { stdenv, fetchFromGitHub, autoconf, automake, libtool, libjack2, alsaLib, pkgconfig }:
 
 stdenv.mkDerivation rec {
-  version = "2.1.1";
+  version = "4.0.0";
   name = "rtmidi-${version}";
 
   src = fetchFromGitHub {
     owner = "thestk";
     repo = "rtmidi";
     rev = "${version}";
-    sha256 = "11pl45lp8sq5xkpipwk622w508nw0qcxr03ibicqn1lsws0hva96";
+    sha256 = "1g31p6a96djlbk9jh5r4pjly3x76lhccva9hrw6xzdma8dsjzgyq";
   };
 
   enableParallelBuilding = true;
diff --git a/pkgs/development/libraries/c-ares/release.patch b/pkgs/development/libraries/c-ares/release.patch
deleted file mode 100644
index e745648062a..00000000000
--- a/pkgs/development/libraries/c-ares/release.patch
+++ /dev/null
@@ -1,19 +0,0 @@
-diff -aur c-ares-cares-1_13_0/ares_version.h c-ares-1.13.0/ares_version.h
---- c-ares-cares-1_13_0/ares_version.h	2017-06-20 02:00:21.000000000 -0400
-+++ c-ares-1.13.0/ares_version.h	2017-06-20 02:03:54.000000000 -0400
-@@ -6,12 +6,12 @@
- #define ARES_COPYRIGHT "2004 - 2016 Daniel Stenberg, <daniel@haxx.se>."
- 
- #define ARES_VERSION_MAJOR 1
--#define ARES_VERSION_MINOR 12
--#define ARES_VERSION_PATCH 1
-+#define ARES_VERSION_MINOR 13
-+#define ARES_VERSION_PATCH 0
- #define ARES_VERSION ((ARES_VERSION_MAJOR<<16)|\
-                        (ARES_VERSION_MINOR<<8)|\
-                        (ARES_VERSION_PATCH))
--#define ARES_VERSION_STR "1.12.1-DEV"
-+#define ARES_VERSION_STR "1.13.0"
- 
- #if (ARES_VERSION >= 0x010700)
- #  define CARES_HAVE_ARES_LIBRARY_INIT 1
diff --git a/pkgs/development/libraries/cfitsio/default.nix b/pkgs/development/libraries/cfitsio/default.nix
index a21158723be..32308c34ead 100644
--- a/pkgs/development/libraries/cfitsio/default.nix
+++ b/pkgs/development/libraries/cfitsio/default.nix
@@ -1,15 +1,23 @@
-{ fetchurl, stdenv }:
+{ fetchurl, stdenv
 
- stdenv.mkDerivation {
-  name = "cfitsio-3.430";
+# Optional dependencies
+, bzip2 ? null }:
+
+stdenv.mkDerivation rec {
+  name = "cfitsio-${version}";
+  version = "3.450";
 
   src = fetchurl {
-    url = "ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/cfitsio3430.tar.gz";
-    sha256 = "07fghxh5fl8nqk3q0dh8rvc83npnm0hisxzcj16a6r7gj5pmp40l";
+    url = "https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/cfitsio${builtins.replaceStrings ["."] [""] version}.tar.gz";
+    sha256 = "0bmrkw6w65zb0k3mszaaqy1f4zjm2hl7njww74nb5v38wvdi4q5z";
   };
 
+  buildInputs = [ bzip2 ];
+
   patches = [ ./darwin-curl-config.patch ./darwin-rpath-universal.patch ];
 
+  configureFlags = stdenv.lib.optional (bzip2 != null) "--with-bzip2=${bzip2.out}";
+
   # Shared-only build
   buildFlags = "shared";
   postPatch = '' sed -e '/^install:/s/libcfitsio.a //' -e 's@/bin/@@g' -i Makefile.in
@@ -27,8 +35,8 @@
          advanced features for manipulating and filtering the information in
          FITS files.
       '';
-    # Permissive BSD-style license.
-    license = "permissive";
+    license = licenses.mit;
+    maintainers = [ maintainers.xbreak ];
     platforms = with platforms; linux ++ darwin;
   };
 }
diff --git a/pkgs/development/libraries/ctl/default.nix b/pkgs/development/libraries/ctl/default.nix
index ac6c9657dde..71e30104476 100644
--- a/pkgs/development/libraries/ctl/default.nix
+++ b/pkgs/development/libraries/ctl/default.nix
@@ -1,22 +1,31 @@
-{ stdenv, callPackage, cmake, pkgconfig, ilmbase, libtiff, openexr }:
+{ stdenv, fetchFromGitHub, fetchpatch, cmake, pkgconfig, ilmbase, libtiff, openexr }:
 
-let
-  source = callPackage ./source.nix { };
-in
-stdenv.mkDerivation {
-  name = "ctl-${source.version}";
+stdenv.mkDerivation rec {
+  pname = "ctl";
+  version = "1.5.2";
 
-  src = source.src;
+  src = fetchFromGitHub {
+    owner = "ampas";
+    repo = pname;
+    rev = "${pname}-${version}";
+    sha256 = "0a698rd1cmixh3mk4r1xa6rjli8b8b7dbx89pb43xkgqxy67glwx";
+  };
+
+  patches = [
+    (fetchpatch {
+      name = "ctl-1.5.2-ilm_230.patch";
+      url = "https://src.fedoraproject.org/rpms/CTL/raw/9d7c15a91bccdc0a9485d463bf2789be72e6b17d/f/ctl-1.5.2-ilm_230.patch";
+      sha256 = "0mdx7llwrm0q8ai53zhyxi40i9h5s339dbkqpqv30yzi2xpnfj3d";
+    })
+  ];
 
-  nativeBuildInputs = [ pkgconfig ];
-  buildInputs = [ cmake libtiff ilmbase openexr ];
+  nativeBuildInputs = [ cmake pkgconfig ];
+  buildInputs = [ libtiff ilmbase openexr ];
 
   meta = with stdenv.lib; {
     description = "Color Transformation Language";
-    homepage = http://ampasctl.sourceforge.net;
-    license = "A.M.P.A.S";
+    homepage = "https://github.com/ampas/CTL";
+    license = "A.M.P.A.S"; # BSD-derivative, free but GPL incompatible
     platforms = platforms.all;
   };
-
-  passthru.source = source;
 }
diff --git a/pkgs/development/libraries/ctl/source.nix b/pkgs/development/libraries/ctl/source.nix
deleted file mode 100644
index d0cb83c0369..00000000000
--- a/pkgs/development/libraries/ctl/source.nix
+++ /dev/null
@@ -1,11 +0,0 @@
-{ fetchFromGitHub }:
-rec {
-  version = "1.5.2";
-
-  src = fetchFromGitHub {
-    owner = "ampas";
-    repo = "CTL";
-    rev = "ctl-${version}";
-    sha256 = "0a698rd1cmixh3mk4r1xa6rjli8b8b7dbx89pb43xkgqxy67glwx";
-  };
-}
diff --git a/pkgs/development/libraries/dav1d/default.nix b/pkgs/development/libraries/dav1d/default.nix
index 49536687a93..157a6a21f3d 100644
--- a/pkgs/development/libraries/dav1d/default.nix
+++ b/pkgs/development/libraries/dav1d/default.nix
@@ -2,14 +2,14 @@
 
 stdenv.mkDerivation rec {
   pname = "dav1d";
-  version = "0.3.0";
+  version = "0.3.1";
 
   src = fetchFromGitLab {
     domain = "code.videolan.org";
     owner = "videolan";
     repo = pname;
     rev = version;
-    sha256 = "08vysa3naqjfvld9w1k6l6hby4xfn4l2gvnfnan498g5nss4050h";
+    sha256 = "1m5vdg64iqxpi37l84mcfiq313g9z55zf66s85j2rqik6asmxbqg";
   };
 
   nativeBuildInputs = [ meson ninja nasm ];
diff --git a/pkgs/development/libraries/eccodes/default.nix b/pkgs/development/libraries/eccodes/default.nix
index 4eaded81436..78f80d2baf4 100644
--- a/pkgs/development/libraries/eccodes/default.nix
+++ b/pkgs/development/libraries/eccodes/default.nix
@@ -6,11 +6,11 @@
 with stdenv.lib;
 stdenv.mkDerivation rec {
   name = "eccodes-${version}";
-  version = "2.12.0";
+  version = "2.12.5";
 
   src = fetchurl {
     url = "https://confluence.ecmwf.int/download/attachments/45757960/eccodes-${version}-Source.tar.gz";
-    sha256 = "0rqkx6p85b0v6zdkm4q2r516b7ldkxhkfc0cwkl24djlkv7fanpp";
+    sha256 = "0576fccng4nvmq5gma1nb1v00if5cwl81w4nv5zkb80q5wicn50c";
   };
 
   postPatch = ''
diff --git a/pkgs/development/libraries/fflas-ffpack/default.nix b/pkgs/development/libraries/fflas-ffpack/default.nix
index a37a11f5cb0..a67210e860c 100644
--- a/pkgs/development/libraries/fflas-ffpack/default.nix
+++ b/pkgs/development/libraries/fflas-ffpack/default.nix
@@ -1,28 +1,18 @@
 { stdenv, fetchFromGitHub, autoreconfHook, givaro, pkgconfig, blas
-, fetchpatch
 , gmpxx
 }:
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "fflas-ffpack";
-  version = "2.3.2";
+  version = "2.4.0";
 
   src = fetchFromGitHub {
     owner = "linbox-team";
     repo = "${pname}";
     rev = "v${version}";
-    sha256 = "1cqhassj2dny3gx0iywvmnpq8ca0d6m82xl5rz4mb8gaxr2kwddl";
+    sha256 = "1q1ala88ysz14pb5cn2kskv829nc1qif7zfzjwzhd5nnzwyivmc4";
   };
 
-  patches = [
-    # https://github.com/linbox-team/fflas-ffpack/issues/146
-    (fetchpatch {
-      name = "fix-flaky-test-fgemm-check.patch";
-      url = "https://github.com/linbox-team/fflas-ffpack/commit/d8cd67d91a9535417a5cb193cf1540ad6758a3db.patch";
-      sha256 = "1gnfc616fvnlr0smvz6lb2d445vn8fgv6vqcr6pwm3dj4wa6v3b3";
-    })
-  ];
-
   checkInputs = [
     gmpxx
   ];
diff --git a/pkgs/development/libraries/ffmpeg-full/default.nix b/pkgs/development/libraries/ffmpeg-full/default.nix
index 306b4e22cfc..db606cc02d6 100644
--- a/pkgs/development/libraries/ffmpeg-full/default.nix
+++ b/pkgs/development/libraries/ffmpeg-full/default.nix
@@ -97,8 +97,7 @@
 , libXv ? null # Xlib support
 , libXext ? null # Xlib support
 , lzma ? null # xz-utils
-, nvenc ? false, nvidia-video-sdk ? null, nv-codec-headers ? null # NVIDIA NVENC support
-, callPackage # needed for NVENC to access external ffmpeg nvidia headers
+, nvenc ? true, nv-codec-headers ? null # NVIDIA NVENC support
 , openal ? null # OpenAL 1.1 capture support
 #, opencl ? null # OpenCL code
 , opencore-amr ? null # AMR-NB de/encoder & AMR-WB decoder
@@ -228,15 +227,14 @@ assert libxcbxfixesExtlib -> libxcb != null;
 assert libxcbshapeExtlib -> libxcb != null;
 assert openglExtlib -> libGLU_combined != null;
 assert opensslExtlib -> gnutls == null && openssl != null && nonfreeLicensing;
-assert nvenc -> nvidia-video-sdk != null && nonfreeLicensing;
 
 stdenv.mkDerivation rec {
   name = "ffmpeg-full-${version}";
-  version = "4.1.2";
+  version = "4.1.3";
 
   src = fetchurl {
     url = "https://www.ffmpeg.org/releases/ffmpeg-${version}.tar.xz";
-    sha256 = "0yrl6nij4b1pk1c4nbi80857dsd760gziiss2ls19awq8zj0lpxr";
+    sha256 = "0gdnprc7gk4b7ckq8wbxbrj7i00r76r9a5g9mj7iln40512j0c0c";
   };
 
   prePatch = ''
@@ -418,13 +416,13 @@ stdenv.mkDerivation rec {
     ++ optional ((isLinux || isFreeBSD) && libva != null) libva
     ++ optionals isLinux [ alsaLib libraw1394 libv4l ]
     ++ optional (isLinux && libmfx != null) libmfx
-    ++ optionals nvenc [ nvidia-video-sdk nv-codec-headers ]
+    ++ optional nvenc nv-codec-headers
     ++ optionals stdenv.isDarwin [ Cocoa CoreServices CoreAudio AVFoundation
                                    MediaToolbox VideoDecodeAcceleration
                                    libiconv cf-private /* For _OBJC_EHTYPE_$_NSException */ ];
 
-  # Build qt-faststart executable
-  buildPhase = optional qtFaststartProgram ''make tools/qt-faststart'';
+  buildFlags = [ "all" ]
+    ++ optional qtFaststartProgram "tools/qt-faststart"; # Build qt-faststart executable
 
   # Hacky framework patching technique borrowed from the phantomjs2 package
   postInstall = optionalString qtFaststartProgram ''
diff --git a/pkgs/development/libraries/ffmpeg/4.nix b/pkgs/development/libraries/ffmpeg/4.nix
index 7e2507d5afd..3066e0b12e5 100644
--- a/pkgs/development/libraries/ffmpeg/4.nix
+++ b/pkgs/development/libraries/ffmpeg/4.nix
@@ -6,7 +6,7 @@
 
 callPackage ./generic.nix (args // rec {
   version = "${branch}";
-  branch = "4.1.2";
-  sha256 = "00yzwc2g97h8ws0haz1p0ahaavhgrbha6xjdc53a5vyfy3zyy3i0";
+  branch = "4.1.3";
+  sha256 = "0aka5pibjhpks1wrsvqpy98v8cbvyvnngwqhh4ajkg6pbdl7k9i9";
   darwinFrameworks = [ Cocoa CoreMedia VideoToolbox ];
 })
diff --git a/pkgs/development/libraries/ffmpeg/vpxenc-0.10-libvpx-1.5.patch b/pkgs/development/libraries/ffmpeg/vpxenc-0.10-libvpx-1.5.patch
deleted file mode 100644
index 740bb746aad..00000000000
--- a/pkgs/development/libraries/ffmpeg/vpxenc-0.10-libvpx-1.5.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-diff --git a/libavcodec/libvpxenc.c b/libavcodec/libvpxenc.c
-index 1d33ce9..dface51 100644
---- a/libavcodec/libvpxenc.c
-+++ b/libavcodec/libvpxenc.c
-@@ -78,19 +78,11 @@ typedef struct VP8EncoderContext {
- 
- /** String mappings for enum vp8e_enc_control_id */
- static const char *ctlidstr[] = {
--    [VP8E_UPD_ENTROPY]           = "VP8E_UPD_ENTROPY",
--    [VP8E_UPD_REFERENCE]         = "VP8E_UPD_REFERENCE",
--    [VP8E_USE_REFERENCE]         = "VP8E_USE_REFERENCE",
--    [VP8E_SET_ROI_MAP]           = "VP8E_SET_ROI_MAP",
--    [VP8E_SET_ACTIVEMAP]         = "VP8E_SET_ACTIVEMAP",
--    [VP8E_SET_SCALEMODE]         = "VP8E_SET_SCALEMODE",
-     [VP8E_SET_CPUUSED]           = "VP8E_SET_CPUUSED",
-     [VP8E_SET_ENABLEAUTOALTREF]  = "VP8E_SET_ENABLEAUTOALTREF",
-     [VP8E_SET_NOISE_SENSITIVITY] = "VP8E_SET_NOISE_SENSITIVITY",
--    [VP8E_SET_SHARPNESS]         = "VP8E_SET_SHARPNESS",
-     [VP8E_SET_STATIC_THRESHOLD]  = "VP8E_SET_STATIC_THRESHOLD",
-     [VP8E_SET_TOKEN_PARTITIONS]  = "VP8E_SET_TOKEN_PARTITIONS",
--    [VP8E_GET_LAST_QUANTIZER]    = "VP8E_GET_LAST_QUANTIZER",
-     [VP8E_SET_ARNR_MAXFRAMES]    = "VP8E_SET_ARNR_MAXFRAMES",
-     [VP8E_SET_ARNR_STRENGTH]     = "VP8E_SET_ARNR_STRENGTH",
-     [VP8E_SET_ARNR_TYPE]         = "VP8E_SET_ARNR_TYPE",
diff --git a/pkgs/development/libraries/ffmpeg/vpxenc-1.2-libvpx-1.5.patch b/pkgs/development/libraries/ffmpeg/vpxenc-1.2-libvpx-1.5.patch
deleted file mode 100644
index 7f1ec1df6c7..00000000000
--- a/pkgs/development/libraries/ffmpeg/vpxenc-1.2-libvpx-1.5.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-diff --git a/libavcodec/libvpxenc.c b/libavcodec/libvpxenc.c
-index 4f1adb8..1791952 100644
---- a/libavcodec/libvpxenc.c
-+++ b/libavcodec/libvpxenc.c
-@@ -87,19 +87,11 @@ typedef struct VP8EncoderContext {
- 
- /** String mappings for enum vp8e_enc_control_id */
- static const char *const ctlidstr[] = {
--    [VP8E_UPD_ENTROPY]           = "VP8E_UPD_ENTROPY",
--    [VP8E_UPD_REFERENCE]         = "VP8E_UPD_REFERENCE",
--    [VP8E_USE_REFERENCE]         = "VP8E_USE_REFERENCE",
--    [VP8E_SET_ROI_MAP]           = "VP8E_SET_ROI_MAP",
--    [VP8E_SET_ACTIVEMAP]         = "VP8E_SET_ACTIVEMAP",
--    [VP8E_SET_SCALEMODE]         = "VP8E_SET_SCALEMODE",
-     [VP8E_SET_CPUUSED]           = "VP8E_SET_CPUUSED",
-     [VP8E_SET_ENABLEAUTOALTREF]  = "VP8E_SET_ENABLEAUTOALTREF",
-     [VP8E_SET_NOISE_SENSITIVITY] = "VP8E_SET_NOISE_SENSITIVITY",
--    [VP8E_SET_SHARPNESS]         = "VP8E_SET_SHARPNESS",
-     [VP8E_SET_STATIC_THRESHOLD]  = "VP8E_SET_STATIC_THRESHOLD",
-     [VP8E_SET_TOKEN_PARTITIONS]  = "VP8E_SET_TOKEN_PARTITIONS",
--    [VP8E_GET_LAST_QUANTIZER]    = "VP8E_GET_LAST_QUANTIZER",
-     [VP8E_SET_ARNR_MAXFRAMES]    = "VP8E_SET_ARNR_MAXFRAMES",
-     [VP8E_SET_ARNR_STRENGTH]     = "VP8E_SET_ARNR_STRENGTH",
-     [VP8E_SET_ARNR_TYPE]         = "VP8E_SET_ARNR_TYPE",
diff --git a/pkgs/development/libraries/freetype/disable-pcf-long-family-names.patch b/pkgs/development/libraries/freetype/disable-pcf-long-family-names.patch
deleted file mode 100644
index e3dfe4aabd6..00000000000
--- a/pkgs/development/libraries/freetype/disable-pcf-long-family-names.patch
+++ /dev/null
@@ -1,15 +0,0 @@
-diff --git a/include/freetype/config/ftoption.h b/include/freetype/config/ftoption.h
-index 5676074..37a0d00 100644
---- a/include/freetype/config/ftoption.h
-+++ b/include/freetype/config/ftoption.h
-@@ -856,7 +856,7 @@ FT_BEGIN_HEADER
-   /* If this option is activated, it can be controlled with the            */
-   /* `no-long-family-names' property of the pcf driver module.             */
-   /*                                                                       */
--#define PCF_CONFIG_OPTION_LONG_FAMILY_NAMES
-+/* #define PCF_CONFIG_OPTION_LONG_FAMILY_NAMES */
- 
- 
-   /*************************************************************************/
--- 
-cgit v1.0-41-gc330
\ No newline at end of file
diff --git a/pkgs/development/libraries/gdk-pixbuf/no-mime-sniffing.patch b/pkgs/development/libraries/gdk-pixbuf/no-mime-sniffing.patch
deleted file mode 100644
index 9896e25acda..00000000000
--- a/pkgs/development/libraries/gdk-pixbuf/no-mime-sniffing.patch
+++ /dev/null
@@ -1,18 +0,0 @@
---- a/meson.build
-+++ b/meson.build
-@@ -186,13 +186,8 @@
- gmodule_dep = dependency('gmodule-no-export-2.0')
- gio_dep = dependency('gio-2.0')
- 
--# On non-Windows/macOS systems we always required shared-mime-info and GIO
--if host_system != 'windows' and host_system != 'darwin'
--  shared_mime_dep = dependency('shared-mime-info')
--  gdk_pixbuf_conf.set('GDK_PIXBUF_USE_GIO_MIME', 1)
--else
--  shared_mime_dep = []
--endif
-+# No MIME sniffing for now
-+shared_mime_dep = []
- 
- gdk_pixbuf_deps = [ mathlib_dep, gobject_dep, gmodule_dep, gio_dep, shared_mime_dep ]
- 
diff --git a/pkgs/development/libraries/givaro/default.nix b/pkgs/development/libraries/givaro/default.nix
index bfbce57b0a6..0221b9c7013 100644
--- a/pkgs/development/libraries/givaro/default.nix
+++ b/pkgs/development/libraries/givaro/default.nix
@@ -2,12 +2,12 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "givaro";
-  version = "4.0.4";
+  version = "4.1.0";
   src = fetchFromGitHub {
     owner = "linbox-team";
     repo = "${pname}";
     rev = "v${version}";
-    sha256 = "199p8wyj5i63jbnk7j8qbdbfp5rm2lpmcxyk3mdjy9bz7ygx3hhy";
+    sha256 = "1l1172c964hni66mjdmhr7766l5k7y63zs3hgcpr10a8f1nx3iwp";
   };
 
   enableParallelBuilding = true;
diff --git a/pkgs/development/libraries/glibc/glibc-remove-datetime-from-nscd.patch b/pkgs/development/libraries/glibc/glibc-remove-datetime-from-nscd.patch
deleted file mode 100644
index db010e62366..00000000000
--- a/pkgs/development/libraries/glibc/glibc-remove-datetime-from-nscd.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/nscd/nscd_stat.c
-+++ b/nscd/nscd_stat.c
-@@ -37,7 +37,7 @@
- 
- 
- /* We use this to make sure the receiver is the same.  */
--static const char compilation[21] = __DATE__ " " __TIME__;
-+static const char compilation[] = "@out@";
- 
- /* Statistic data for one database.  */
- struct dbstat
diff --git a/pkgs/development/libraries/gpgme/gpgme_libsuffix.patch b/pkgs/development/libraries/gpgme/gpgme_libsuffix.patch
deleted file mode 100644
index 4abc2757cf6..00000000000
--- a/pkgs/development/libraries/gpgme/gpgme_libsuffix.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff --git a/lang/cpp/src/GpgmeppConfig.cmake.in.in b/lang/cpp/src/GpgmeppConfig.cmake.in.in
-index 928d19f..cbe9713 100644 (file)
---- a/lang/cpp/src/GpgmeppConfig.cmake.in.in
-+++ b/lang/cpp/src/GpgmeppConfig.cmake.in.in
-@@ -63,7 +63,7 @@ add_library(Gpgmepp SHARED IMPORTED)
- 
- set_target_properties(Gpgmepp PROPERTIES
-   INTERFACE_INCLUDE_DIRECTORIES "@resolved_includedir@/gpgme++;@resolved_includedir@"
--  INTERFACE_LINK_LIBRARIES "pthread;@resolved_libdir@/libgpgme@libsuffix@;@LIBASSUAN_LIBS@"
-+  INTERFACE_LINK_LIBRARIES "pthread;@resolved_libdir@/libgpgme.so;@LIBASSUAN_LIBS@"
-   IMPORTED_LOCATION "@resolved_libdir@/libgpgmepp.so"
- )
diff --git a/pkgs/development/libraries/gtksourceview/3.x.nix b/pkgs/development/libraries/gtksourceview/3.x.nix
index 0f72afe4cc1..9d1751afaf9 100644
--- a/pkgs/development/libraries/gtksourceview/3.x.nix
+++ b/pkgs/development/libraries/gtksourceview/3.x.nix
@@ -3,11 +3,11 @@
 
 stdenv.mkDerivation rec {
   name = "gtksourceview-${version}";
-  version = "3.24.10";
+  version = "3.24.11";
 
   src = fetchurl {
     url = "mirror://gnome/sources/gtksourceview/${stdenv.lib.versions.majorMinor version}/${name}.tar.xz";
-    sha256 = "16ym7jwiki4s1pilwr4incx0yg7ll94f1cajrnpndkxxs36hcm5b";
+    sha256 = "1zbpj283b5ycz767hqz5kdq02wzsga65pp4fykvhg8xj6x50f6v9";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/libraries/hyperscan/default.nix b/pkgs/development/libraries/hyperscan/default.nix
index 53a3210caca..bc0ce15a083 100644
--- a/pkgs/development/libraries/hyperscan/default.nix
+++ b/pkgs/development/libraries/hyperscan/default.nix
@@ -1,5 +1,7 @@
-{ lib, stdenv, fetchFromGitHub, cmake, ragel, python27
+{ stdenv, fetchFromGitHub, cmake, ragel, python3
+, coreutils, gnused, utillinux
 , boost
+, withStatic ? false # build only shared libs by default, build static+shared if true
 }:
 
 # NOTICE: pkgconfig, pcap and pcre intentionally omitted from build inputs
@@ -8,45 +10,41 @@
 #         I not see any reason (for now) to backport 8.41.
 
 stdenv.mkDerivation rec {
-  name = "${pname}-${version}";
   pname = "hyperscan";
-  version = "5.1.0";
+  version = "5.1.1";
 
   src = fetchFromGitHub {
     owner = "intel";
-    repo = "hyperscan";
-    sha256 = "0r2c7s7alnq14yhbfhpkq6m28a3pyfqd427115k0754afxi82vbq";
+    repo = pname;
+    sha256 = "11adkz5ln2d2jywwlmixfnwqp5wxskq1104hmmcpws590lhkjv6j";
     rev = "v${version}";
   };
 
   outputs = [ "out" "dev" ];
 
   buildInputs = [ boost ];
-  nativeBuildInputs = [ cmake ragel python27 ];
+  nativeBuildInputs = [
+    cmake ragel python3
+    # Consider simply using busybox for these
+    # Need at least: rev, sed, cut, nm
+    coreutils gnused utillinux
+  ];
 
   cmakeFlags = [
     "-DFAT_RUNTIME=ON"
     "-DBUILD_AVX512=ON"
-    "-DBUILD_STATIC_AND_SHARED=ON"
-  ];
+  ]
+  ++ stdenv.lib.optional (withStatic) "-DBUILD_STATIC_AND_SHARED=ON"
+  ++ stdenv.lib.optional (!withStatic) "-DBUILD_SHARED_LIBS=ON";
 
-  prePatch = ''
+  postPatch = ''
     sed -i '/examples/d' CMakeLists.txt
+    substituteInPlace libhs.pc.in \
+      --replace "libdir=@CMAKE_INSTALL_PREFIX@/@CMAKE_INSTALL_LIBDIR@" "libdir=@CMAKE_INSTALL_LIBDIR@" \
+      --replace "includedir=@CMAKE_INSTALL_PREFIX@/@CMAKE_INSTALL_INCLUDEDIR@" "includedir=@CMAKE_INSTALL_INCLUDEDIR@"
   '';
 
-  postInstall = ''
-    mkdir -p $dev/lib
-    mv $out/lib/*.a $dev/lib/
-    ln -sf $out/lib/libhs.so $dev/lib/
-    ln -sf $out/lib/libhs_runtime.so $dev/lib/
-  '';
-
-  postFixup = ''
-    sed -i "s,$out/include,$dev/include," $dev/lib/pkgconfig/libhs.pc
-    sed -i "s,$out/lib,$dev/lib," $dev/lib/pkgconfig/libhs.pc
-  '';
-
-  meta = {
+  meta = with stdenv.lib; {
     description = "High-performance multiple regex matching library";
     longDescription = ''
       Hyperscan is a high-performance multiple regex matching library.
@@ -61,9 +59,9 @@ stdenv.mkDerivation rec {
       Hyperscan is typically used in a DPI library stack.
     '';
 
-    homepage = https://www.hyperscan.io/;
-    maintainers = with lib.maintainers; [ avnik ];
-    platforms = [ "x86_64-linux" "x86_64-darwin" ];
-    license = lib.licenses.bsd3;
+    homepage = "https://www.hyperscan.io/";
+    maintainers = with maintainers; [ avnik ];
+    platforms = [ "x86_64-linux" ]; # can't find nm on darwin ; might build on aarch64 but untested
+    license = licenses.bsd3;
   };
 }
diff --git a/pkgs/development/libraries/java/lombok/default.nix b/pkgs/development/libraries/java/lombok/default.nix
index 7f932d52dc4..be3ddfff4c8 100644
--- a/pkgs/development/libraries/java/lombok/default.nix
+++ b/pkgs/development/libraries/java/lombok/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl }:
 
 stdenv.mkDerivation rec {
-  name = "lombok-1.18.4";
+  name = "lombok-1.18.8";
 
   src = fetchurl {
     url = "https://projectlombok.org/downloads/${name}.jar";
-    sha256 = "0hlpycnmzd71ihn59hzf445dvwky2lkv57jimx91i6v7xcnr5wrr";
+    sha256 = "1z14rc3fh03qvn2xkjrb7ha0hddv3f3vsp781xm336sp4cl9b5h3";
   };
 
   buildCommand = ''
diff --git a/pkgs/development/libraries/leptonica/default.nix b/pkgs/development/libraries/leptonica/default.nix
index b9b6c3c7c24..52d835d7a20 100644
--- a/pkgs/development/libraries/leptonica/default.nix
+++ b/pkgs/development/libraries/leptonica/default.nix
@@ -1,44 +1,27 @@
-{ stdenv, fetchurl, fetchpatch, autoreconfHook, pkgconfig
+{ stdenv, fetchurl, fetchpatch, autoreconfHook, pkgconfig, which, gnuplot
 , giflib, libjpeg, libpng, libtiff, libwebp, openjpeg, zlib
 }:
 
 stdenv.mkDerivation rec {
   name = "leptonica-${version}";
-  version = "1.74.1";
+  version = "1.78.0";
 
   src = fetchurl {
     url = "http://www.leptonica.org/source/${name}.tar.gz";
-    sha256 = "0qpcidvv6igybrrhj0m6j47g642c8sk1qn4dpj82mgd38xx52skl";
+    sha256 = "122s9b8hi93va4lgwnwrbma50x5fp740npy0s92xybd2wy0jxvg2";
   };
 
-  patches = stdenv.lib.singleton (fetchpatch {
-    # configure: Support pkg-config
-    url = "https://github.com/DanBloomberg/leptonica/commit/"
-        + "4476d162cc191a0fefb2ce434153e12bbf188664.patch";
-    sha256 = "1razzp2g49shfaravfqpxm3ivcd1r92lvqysll6nnf6d1wp9865s";
-  });
-
-  postPatch = ''
-    # Remove the AC_SUBST() macros on *_LIBS, because the *_LIBS variables will
-    # be automatically set by PKG_CHECK_MODULES() since autotools 0.24 and
-    # using the ones that are set here in Leptonica's configure.ac do not
-    # include -L linker flags.
-    sed -i -e '/PKG_CHECK_MODULES/,/^ *\])/s/AC_SUBST([^)]*)//' configure.ac
-
-    # The giflib package doesn't ship a pkg-config file, so we need to inject
-    # the linker search path.
-    substituteInPlace configure.ac --replace -lgif \
-      ${stdenv.lib.escapeShellArg "'-L${giflib}/lib -lgif'"}
-  '';
-
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
   buildInputs = [ giflib libjpeg libpng libtiff libwebp openjpeg zlib ];
+  enableParallelBuilding = true;
+
+  checkInputs = [ which gnuplot ];
+  doCheck = !stdenv.isDarwin;
 
   meta = {
     description = "Image processing and analysis library";
     homepage = http://www.leptonica.org/;
-    # Its own license: http://www.leptonica.org/about-the-license.html
-    license = stdenv.lib.licenses.free;
+    license = stdenv.lib.licenses.bsd2; # http://www.leptonica.org/about-the-license.html
     platforms = stdenv.lib.platforms.unix;
   };
 }
diff --git a/pkgs/development/libraries/libdazzle/default.nix b/pkgs/development/libraries/libdazzle/default.nix
index 59f07202fde..28d9152dcee 100644
--- a/pkgs/development/libraries/libdazzle/default.nix
+++ b/pkgs/development/libraries/libdazzle/default.nix
@@ -2,7 +2,7 @@
 , gtk-doc, docbook_xsl, docbook_xml_dtd_43, glibcLocales, dbus, xvfb_run, glib, gtk3, gnome3 }:
 
 let
-  version = "3.32.1";
+  version = "3.32.2";
   pname = "libdazzle";
 in
 stdenv.mkDerivation {
@@ -13,7 +13,7 @@ stdenv.mkDerivation {
 
   src = fetchurl {
     url = "mirror://gnome/sources/libdazzle/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz";
-    sha256 = "0wprqgn480r31pcgmpyk9l6cfvlczfcx10fpqaq9pbn3vjgs3393";
+    sha256 = "0hgi7gnkna9n42nh7p81crrw0jjj22yr8acych60wxh6hzxqsgs1";
   };
 
   nativeBuildInputs = [ ninja meson pkgconfig vala gobject-introspection libxml2 gtk-doc docbook_xsl docbook_xml_dtd_43 glibcLocales dbus xvfb_run ];
diff --git a/pkgs/development/libraries/libgda/default.nix b/pkgs/development/libraries/libgda/default.nix
index 95860ac9420..bb6402dc428 100644
--- a/pkgs/development/libraries/libgda/default.nix
+++ b/pkgs/development/libraries/libgda/default.nix
@@ -9,11 +9,11 @@ assert postgresSupport -> postgresql != null;
 
 (if stdenv.isAarch64 then overrideCC stdenv gcc6 else stdenv).mkDerivation rec {
   pname = "libgda";
-  version = "5.2.8";
+  version = "5.2.9";
 
   src = fetchurl {
     url = "mirror://gnome/sources/${pname}/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz";
-    sha256 = "0id4my5wh2m6rd7ijqp2azsjdb4l4yjrv3imq71kly00gjc6v1z2";
+    sha256 = "16vxv2qvysh22s8h9h6irx96sacagxkz0i4qgi1wc6ibly6fvjjr";
   };
   configureFlags = with stdenv.lib; [ "--enable-gi-system-install=no" ]
     ++ (optional (mysqlSupport) "--with-mysql=yes")
diff --git a/pkgs/development/libraries/libimobiledevice/disable_sslv3.patch b/pkgs/development/libraries/libimobiledevice/disable_sslv3.patch
deleted file mode 100644
index 646b829496f..00000000000
--- a/pkgs/development/libraries/libimobiledevice/disable_sslv3.patch
+++ /dev/null
@@ -1,25 +0,0 @@
-From e19de4f0d4cb70e30017edfc6b4ca1b89ffbd381 Mon Sep 17 00:00:00 2001
-From: Franz Pletz <fpletz@fnordicwalking.de>
-Date: Thu, 14 Jan 2016 14:58:23 +0100
-Subject: [PATCH] Disable SSLv3
-
----
- src/idevice.c | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/src/idevice.c b/src/idevice.c
-index ce27495..8f03094 100644
---- a/src/idevice.c
-+++ b/src/idevice.c
-@@ -678,7 +678,7 @@ LIBIMOBILEDEVICE_API idevice_error_t idevice_connection_enable_ssl(idevice_conne
- 	}
- 	BIO_set_fd(ssl_bio, (int)(long)connection->data, BIO_NOCLOSE);
- 
--	SSL_CTX *ssl_ctx = SSL_CTX_new(SSLv3_method());
-+	SSL_CTX *ssl_ctx = SSL_CTX_new(SSLv23_method());
- 	if (ssl_ctx == NULL) {
- 		debug_info("ERROR: Could not create SSL context.");
- 		BIO_free(ssl_bio);
--- 
-2.7.0
-
diff --git a/pkgs/development/libraries/libnsl/cdefs.patch b/pkgs/development/libraries/libnsl/cdefs.patch
deleted file mode 100644
index dbbe800a347..00000000000
--- a/pkgs/development/libraries/libnsl/cdefs.patch
+++ /dev/null
@@ -1,30 +0,0 @@
---- a/src/rpcsvc/nislib.h
-+++ b/src/rpcsvc/nislib.h
-@@ -19,6 +19,7 @@
- #ifndef	__RPCSVC_NISLIB_H__
- #define	__RPCSVC_NISLIB_H__
- 
-+#include <sys/cdefs.h>
- #include <features.h>
- 
- __BEGIN_DECLS
---- a/src/rpcsvc/ypclnt.h
-+++ b/src/rpcsvc/ypclnt.h
-@@ -20,6 +20,7 @@
- #ifndef	__RPCSVC_YPCLNT_H__
- #define	__RPCSVC_YPCLNT_H__
- 
-+#include <sys/cdefs.h>
- #include <features.h>
- 
- /* Some defines */
---- a/src/rpcsvc/ypupd.h
-+++ b/src/rpcsvc/ypupd.h
-@@ -33,6 +33,7 @@
- #ifndef __RPCSVC_YPUPD_H__
- #define __RPCSVC_YPUPD_H__
- 
-+#include <sys/cdefs.h>
- #include <features.h>
- 
- #include <rpc/rpc.h>
diff --git a/pkgs/development/libraries/libnsl/default.nix b/pkgs/development/libraries/libnsl/default.nix
index 9e8a46b2e6b..79006484743 100644
--- a/pkgs/development/libraries/libnsl/default.nix
+++ b/pkgs/development/libraries/libnsl/default.nix
@@ -1,21 +1,19 @@
 { stdenv, fetchFromGitHub, autoreconfHook, libtirpc, pkgconfig }:
 
 stdenv.mkDerivation rec {
-  name = "libnsl-${version}";
-  version = "1.1.0";
+  pname = "libnsl";
+  version = "1.2.0";
 
   src = fetchFromGitHub {
     owner = "thkukuk";
-    repo = "libnsl";
-    rev = "libnsl-${version}";
-    sha256 = "0h8br0gmgw3fp5fmy6bfbj1qlk9hry1ssg25ssjgxbd8spczpscs";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "1chzqhcgh0yia9js8mh92cmhyka7rh32ql6b3mgdk26n94dqzs8b";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
   buildInputs = [ libtirpc ];
 
-  patches = stdenv.lib.optionals stdenv.hostPlatform.isMusl [ ./cdefs.patch ./nis_h.patch ];
-
   meta = with stdenv.lib; {
     description = "Client interface library for NIS(YP) and NIS+";
     homepage = https://github.com/thkukuk/libnsl;
diff --git a/pkgs/development/libraries/libnsl/nis_h.patch b/pkgs/development/libraries/libnsl/nis_h.patch
deleted file mode 100644
index 199259df2e8..00000000000
--- a/pkgs/development/libraries/libnsl/nis_h.patch
+++ /dev/null
@@ -1,45 +0,0 @@
---- a/src/rpcsvc/nis.h
-+++ b/src/rpcsvc/nis.h
-@@ -32,6 +32,7 @@
- #ifndef _RPCSVC_NIS_H
- #define _RPCSVC_NIS_H 1
- 
-+#include <sys/cdefs.h>
- #include <features.h>
- #include <rpc/rpc.h>
- #include <rpcsvc/nis_tags.h>
-@@ -56,6 +57,34 @@
-  *                                              <kukuk@suse.de>
-  */
- 
-+#ifndef rawmemchr
-+#define rawmemchr(s,c) memchr((s),(size_t)-1,(c))
-+#endif
-+
-+#ifndef __asprintf
-+#define __asprintf asprintf
-+#endif
-+
-+#ifndef __mempcpy
-+#define __mempcpy mempcpy
-+#endif
-+
-+#ifndef __strtok_r
-+#define __strtok_r strtok_r
-+#endif
-+
-+#ifndef __always_inline
-+#define __always_inline __attribute__((__always_inline__))
-+#endif
-+
-+#ifndef TEMP_FAILURE_RETRY
-+#define TEMP_FAILURE_RETRY(exp) ({ \
-+typeof (exp) _rc; \
-+ do { \
-+  _rc = (exp); \
-+ } while (_rc == -1 && errno == EINTR); \
-+ _rc; })
-+#endif
- 
- #ifndef __nis_object_h
- #define __nis_object_h
diff --git a/pkgs/development/libraries/libosinfo/default.nix b/pkgs/development/libraries/libosinfo/default.nix
index e947ec22bf8..9efeb0f678e 100644
--- a/pkgs/development/libraries/libosinfo/default.nix
+++ b/pkgs/development/libraries/libosinfo/default.nix
@@ -3,11 +3,12 @@
 }:
 
 stdenv.mkDerivation rec {
-  name = "libosinfo-1.4.0";
+  pname = "libosinfo";
+  version = "1.5.0";
 
   src = fetchurl {
-    url = "https://releases.pagure.org/libosinfo/${name}.tar.gz";
-    sha256 = "0ra1p2rnnwkq0181ayn0l0rs1pvk4a0i8fa08nqjfmqs5fl637m2";
+    url = "https://releases.pagure.org/${pname}/${pname}-${version}.tar.gz";
+    sha256 = "12b0xj9fz9q91d1pz9xm6aqap5k1ip0m9m3qvqmwjy1lk1kjasdz";
   };
 
   outputs = [ "out" "dev" "devdoc" ];
diff --git a/pkgs/development/libraries/libpointmatcher/default.nix b/pkgs/development/libraries/libpointmatcher/default.nix
index 2b8fc1fcc8f..cd841a9d8f8 100644
--- a/pkgs/development/libraries/libpointmatcher/default.nix
+++ b/pkgs/development/libraries/libpointmatcher/default.nix
@@ -1,17 +1,18 @@
-{stdenv, fetchFromGitHub, cmake, eigen, boost, libnabo}:
+{ stdenv, fetchFromGitHub, cmake, eigen, boost, libnabo }:
 
 stdenv.mkDerivation rec {
-  version = "2016-09-11";
-  name = "libpointmatcher-${version}";
+  pname = "libpointmatcher";
+  version = "1.3.1";
 
   src = fetchFromGitHub {
     owner = "ethz-asl";
-    repo = "libpointmatcher";
-    rev = "75044815d40ff934fe0bb7e05ed8bbf18c06493b";
-    sha256 = "1s7ilvg3lhr1fq8sxw05ydmbd3kl46496jnyxprhnpgvpmvqsbzl";
+    repo = pname;
+    rev = version;
+    sha256 = "0lai6sr3a9dj1j4pgjjyp7mx10wixy5wpvbka8nsc2danj6xhdyd";
   };
 
-  buildInputs = [cmake eigen boost libnabo];
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [ eigen boost libnabo ];
 
   enableParallelBuilding = true;
 
@@ -19,11 +20,11 @@ stdenv.mkDerivation rec {
     -DEIGEN_INCLUDE_DIR=${eigen}/include/eigen3
   ";
 
+  doCheck = true;
   checkPhase = ''
-  export LD_LIBRARY_PATH=$PWD
-  ./utest/utest --path ../examples/data/
+    export LD_LIBRARY_PATH=$PWD
+    ./utest/utest --path ../examples/data/
   '';
-  doCheck = true;
 
   meta = with stdenv.lib; {
     inherit (src.meta) homepage;
diff --git a/pkgs/development/libraries/libressl/default.nix b/pkgs/development/libraries/libressl/default.nix
index 11ed2eb0044..e694c353df0 100644
--- a/pkgs/development/libraries/libressl/default.nix
+++ b/pkgs/development/libraries/libressl/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, lib }:
+{ stdenv, fetchurl, lib, cmake }:
 
 let
 
@@ -11,7 +11,17 @@ let
       inherit sha256;
     };
 
-    configureFlags = [ "--enable-nc" ];
+    nativeBuildInputs = [ cmake ];
+
+    cmakeFlags = [ "-DENABLE_NC=ON" "-DBUILD_SHARED_LIBS=ON" ];
+
+    # The autoconf build is broken as of 2.9.1, resulting in the following error:
+    # libressl-2.9.1/tls/.libs/libtls.a', needed by 'handshake_table'.
+    # Fortunately LibreSSL provides a CMake build as well, so opt for CMake by
+    # removing ./configure pre-config.
+    preConfigure = ''
+      rm configure
+    '';
 
     enableParallelBuilding = true;
 
@@ -19,6 +29,8 @@ let
 
     postFixup = ''
       moveToOutput "bin/nc" "$nc"
+      moveToOutput "bin/openssl" "$bin"
+      moveToOutput "bin/ocspcheck" "$bin"
       moveToOutput "share/man/man1/nc.1${lib.optionalString (dontGzipMan==null) ".gz"}" "$nc"
     '';
 
@@ -46,7 +58,7 @@ in {
   };
 
   libressl_2_9 = generic {
-    version = "2.9.0";
-    sha256 = "1x1wl6b449m6hfhyxxzxbf2v8yfb5q92q6d01hdg28xp1222jpzb";
+    version = "2.9.1";
+    sha256 = "1y32iz64rqh74m1g641b39h3293dqi4la7i0ckai1p4lcs2xvr1r";
   };
 }
diff --git a/pkgs/development/libraries/libxmlb/default.nix b/pkgs/development/libraries/libxmlb/default.nix
index 257ac8e277d..c5ff7c11713 100644
--- a/pkgs/development/libraries/libxmlb/default.nix
+++ b/pkgs/development/libraries/libxmlb/default.nix
@@ -2,7 +2,7 @@
 
 stdenv.mkDerivation rec {
   name = "libxmlb-${version}";
-  version = "0.1.8";
+  version = "0.1.9";
 
   outputs = [ "out" "lib" "dev" "devdoc" ];
 
@@ -10,7 +10,7 @@ stdenv.mkDerivation rec {
     owner = "hughsie";
     repo = "libxmlb";
     rev = version;
-    sha256 = "0nry2a4vskfklykd20smp4maqpzibc65rzyv4i71nrc55dyjpy7x";
+    sha256 = "1rdpsssrwpx24snqb82hisjybnpz9fq91wbmxfi2s63xllzi14b6";
   };
 
   nativeBuildInputs = [ meson ninja python3 pkgconfig gobject-introspection gtk-doc shared-mime-info docbook_xsl docbook_xml_dtd_43 ];
@@ -33,6 +33,6 @@ stdenv.mkDerivation rec {
     homepage = https://github.com/hughsie/libxmlb;
     license = licenses.lgpl21Plus;
     maintainers = with maintainers; [ jtojnar ];
-    platforms = platforms.unix;
+    platforms = platforms.linux;
   };
 }
diff --git a/pkgs/development/libraries/linbox/default.nix b/pkgs/development/libraries/linbox/default.nix
index ef2dbb10fba..cde422906da 100644
--- a/pkgs/development/libraries/linbox/default.nix
+++ b/pkgs/development/libraries/linbox/default.nix
@@ -12,13 +12,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "linbox";
-  version = "1.5.2";
+  version = "1.6.1";
 
   src = fetchFromGitHub {
     owner = "linbox-team";
     repo = "${pname}";
     rev = "v${version}";
-    sha256 = "1wfivlwp30mzdy1697w7rzb8caajim50mc8h27k82yipn2qc5n4i";
+    sha256 = "11mgj7pkppvzmhx5g6wfnzisk36z00gqzzq9p14hzh5dbdhk3693";
   };
 
   nativeBuildInputs = [
@@ -51,16 +51,6 @@ stdenv.mkDerivation rec {
     "--enable-sage"
   ];
 
-  patches = stdenv.lib.optionals withSage [
-    # https://trac.sagemath.org/ticket/24214#comment:39
-    # Will be resolved by
-    # https://github.com/linbox-team/linbox/issues/69
-    (fetchpatch {
-      url = "https://raw.githubusercontent.com/sagemath/sage/a843f48b7a4267e44895a3dfa892c89c85b85611/build/pkgs/linbox/patches/linbox_charpoly_fullCRA.patch";
-      sha256 = "16nxfzfknra3k2yk3xy0k8cq9rmnmsch3dnkb03kx15h0y0jmibk";
-    })
-  ];
-
   doCheck = true;
 
   enableParallelBuilding = true;
@@ -71,6 +61,7 @@ stdenv.mkDerivation rec {
     license = stdenv.lib.licenses.lgpl21Plus;
     maintainers = [stdenv.lib.maintainers.timokau];
     platforms = stdenv.lib.platforms.unix;
+    broken = stdenv.isDarwin || stdenv.isAarch64; # https://trac.sagemath.org/ticket/26932#comment:21
     homepage = http://linalg.org/;
   };
 }
diff --git a/pkgs/development/libraries/nv-codec-headers/default.nix b/pkgs/development/libraries/nv-codec-headers/default.nix
index 07ec502cd12..73ed932afb6 100644
--- a/pkgs/development/libraries/nv-codec-headers/default.nix
+++ b/pkgs/development/libraries/nv-codec-headers/default.nix
@@ -15,7 +15,7 @@ stdenv.mkDerivation rec {
   meta = {
     description = "FFmpeg version of headers for NVENC";
     homepage = http://ffmpeg.org/;
-    license = stdenv.lib.licenses.gpl3Plus;
+    license = stdenv.lib.licenses.mit;
     maintainers = [ stdenv.lib.maintainers.MP2E ];
     platforms = stdenv.lib.platforms.all;
   };
diff --git a/pkgs/development/libraries/oniguruma/default.nix b/pkgs/development/libraries/oniguruma/default.nix
index 4c994d596ba..b54f34fbb2c 100644
--- a/pkgs/development/libraries/oniguruma/default.nix
+++ b/pkgs/development/libraries/oniguruma/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "onig-${version}";
-  version = "6.9.1";
+  version = "6.9.2";
 
   src = fetchFromGitHub {
     owner = "kkos";
     repo = "oniguruma";
     rev = "v${version}";
-    sha256 = "0dbdd9r15fsqn0rimkjwlv8v68v4i1830h0m7dw56b335wwl6bbg";
+    sha256 = "15asc9v6ylal8fwzlnrh673mp62wngxvv9jx7h86vhljjdap6yfc";
   };
 
   nativeBuildInputs = [ cmake ];
diff --git a/pkgs/development/libraries/opencsg/default.nix b/pkgs/development/libraries/opencsg/default.nix
index e0a6c6a5705..11c66f0d497 100644
--- a/pkgs/development/libraries/opencsg/default.nix
+++ b/pkgs/development/libraries/opencsg/default.nix
@@ -1,5 +1,5 @@
 {stdenv, fetchurl, libGLU_combined, freeglut, glew, libXmu, libXext, libX11
-  }:
+, qmake, GLUT, fixDarwinDylibNames }:
 
 stdenv.mkDerivation rec {
   version = "1.4.2";
@@ -9,27 +9,42 @@ stdenv.mkDerivation rec {
     sha256 = "1ysazynm759gnw1rdhn9xw9nixnzrlzrc462340a6iif79fyqlnr";
   };
 
-  buildInputs = [libGLU_combined freeglut glew libXmu libXext libX11];
+  nativeBuildInputs = [ qmake ]
+    ++ stdenv.lib.optional stdenv.isDarwin fixDarwinDylibNames;
+
+  buildInputs = [ glew ]
+    ++ stdenv.lib.optionals stdenv.isLinux [ libGLU_combined freeglut libXmu libXext libX11 ]
+    ++ stdenv.lib.optional stdenv.isDarwin GLUT;
 
   doCheck = false;
 
+  patches = [ ./fix-pro-files.patch ];
+
   preConfigure = ''
-    sed -i 's/^\(LIBS *=.*\)$/\1 -lX11/' example/Makefile
+    rm example/Makefile src/Makefile
+    qmakeFlags="$qmakeFlags INSTALLDIR=$out"
   '';
 
-  installPhase = ''
-    mkdir -pv "$out/"{bin,share/doc/opencsg}
-
-    cp example/opencsgexample "$out/bin"
-    cp -r include lib "$out"
+  postInstall = ''
+    install -D license.txt "$out/share/doc/opencsg/license.txt"
+  '' + stdenv.lib.optionalString stdenv.isDarwin ''
+    mkdir -p $out/Applications
+    mv $out/bin/*.app $out/Applications
+    rmdir $out/bin || true
+  '';
 
-    cp license.txt "$out/share/doc/opencsg"
+  postFixup = stdenv.lib.optionalString stdenv.isDarwin ''
+    app=$out/Applications/opencsgexample.app/Contents/MacOS/opencsgexample
+    install_name_tool -change \
+      $(otool -L $app | awk '/opencsg.+dylib/ { print $1 }') \
+      $(otool -D $out/lib/libopencsg.dylib | tail -n 1) \
+      $app
   '';
 
   meta = with stdenv.lib; {
     description = "Constructive Solid Geometry library";
     homepage = http://www.opencsg.org/;
-    platforms = platforms.linux;
+    platforms = platforms.unix;
     maintainers = [ maintainers.raskin ];
     license = licenses.gpl2;
   };
diff --git a/pkgs/development/libraries/opencsg/fix-pro-files.patch b/pkgs/development/libraries/opencsg/fix-pro-files.patch
new file mode 100644
index 00000000000..462b44c8f40
--- /dev/null
+++ b/pkgs/development/libraries/opencsg/fix-pro-files.patch
@@ -0,0 +1,21 @@
+diff -ur OpenCSG-1.4.2-pristine/example/example.pro OpenCSG-1.4.2/example/example.pro
+--- OpenCSG-1.4.2-pristine/example/example.pro	2016-09-27 06:11:16.000000000 +0900
++++ OpenCSG-1.4.2/example/example.pro	2019-05-07 10:45:18.785251737 +0900
+@@ -6,7 +6,9 @@
+ INCLUDEPATH += ../include
+ LIBS += -L../lib -lopencsg -lGLEW
+ 
+-INSTALLDIR = /usr/local
++isEmpty(INSTALLDIR) {
++  INSTALLDIR = /usr/local
++}
+ INSTALLS += target
+ target.path = $$INSTALLDIR/bin
+ 
+diff -ur OpenCSG-1.4.2-pristine/opencsg.pro OpenCSG-1.4.2/opencsg.pro
+--- OpenCSG-1.4.2-pristine/opencsg.pro	2016-09-27 06:11:16.000000000 +0900
++++ OpenCSG-1.4.2/opencsg.pro	2019-05-07 10:44:50.578698165 +0900
+@@ -1,2 +1,3 @@
+ TEMPLATE = subdirs
+ SUBDIRS  = src example
++CONFIG   += ordered
diff --git a/pkgs/development/libraries/physics/rivet/key_val.patch b/pkgs/development/libraries/physics/rivet/key_val.patch
deleted file mode 100644
index 0b24d703dac..00000000000
--- a/pkgs/development/libraries/physics/rivet/key_val.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff --git a/bin/rivet-cmphistos b/bin/rivet-cmphistos
---- a/bin/rivet-cmphistos
-+++ b/bin/rivet-cmphistos
-@@ -371,7 +371,7 @@ if __name__ == '__main__':
-         #     plot[key] = val
-         if plotoptions.has_key("PLOT"):
-             for key_val in plotoptions["PLOT"]:
--                key, val = [s.strip() for s in key_val.split("=")]
-+                key, val = [s.strip() for s in key_val.split("=", 1)]
-                 plot[key] = val
-         if opts.LINEAR:
-             plot['LogY'] = '0'
diff --git a/pkgs/development/libraries/physics/rivet/zaxis_fix.patch b/pkgs/development/libraries/physics/rivet/zaxis_fix.patch
deleted file mode 100644
index c255db565e6..00000000000
--- a/pkgs/development/libraries/physics/rivet/zaxis_fix.patch
+++ /dev/null
@@ -1,42 +0,0 @@
-diff --git a/bin/make-plots b/bin/make-plots
-index abb024d..f59293d 100755
---- a/bin/make-plots
-+++ b/bin/make-plots
-@@ -1152,8 +1152,8 @@ class ColorScale(Described):
- 
-         zcustommajortickmarks = int(self.description.get('ZMajorTickMarks', -1))
-         zcustomminortickmarks = int(self.description.get('ZMinorTickMarks', -1))
--        zcustommajorticks=[]
--        zcustomminorticks=[]
-+        zcustommajorticks=None
-+        zcustomminorticks=None
-         if self.description.has_key('ZCustomMajorTicks') and self.description['ZCustomMajorTicks']!='':
-             # TODO: Would be nice to have less invisible separation of the custom ticks than split on tabs
-             ticks = self.description['ZCustomMajorTicks'].strip().split('\t')
-@@ -2214,7 +2214,7 @@ class Ticks(object):
- 
- class XTicks(Ticks):
- 
--    def draw(self, custommajorticks=[], customminorticks=[], custommajortickmarks=-1, customminortickmarks=-1,drawlabels=True):
-+    def draw(self, custommajorticks=None, customminorticks=None, custommajortickmarks=-1, customminortickmarks=-1,drawlabels=True):
-         twosided = bool(int(self.description.get('XTwosidedTicks', '0')))
-         out = ""
-         out += ('\n%\n% X-Ticks\n%\n')
-@@ -2265,7 +2265,7 @@ class XTicks(Ticks):
- 
- class YTicks(Ticks):
- 
--    def draw(self, custommajorticks=[], customminorticks=[], custommajortickmarks=-1, customminortickmarks=-1, drawlabels=True):
-+    def draw(self, custommajorticks=None, customminorticks=None, custommajortickmarks=-1, customminortickmarks=-1, drawlabels=True):
-         twosided = bool(int(self.description.get('YTwosidedTicks', '0')))
-         out = ""
-         out += ('\n%\n% Y-Ticks\n%\n')
-@@ -2320,7 +2320,7 @@ class ZTicks(Ticks):
-         self.description = description
-         self.coors = coors
- 
--    def draw(self, custommajorticks=[], customminorticks=[],
-+    def draw(self, custommajorticks=None, customminorticks=None,
-             custommajortickmarks=-1, customminortickmarks=-1,
-             drawlabels=True):
-         out = ""
diff --git a/pkgs/development/libraries/portaudio/default.nix b/pkgs/development/libraries/portaudio/default.nix
index 6a882ecd900..89248597f5d 100644
--- a/pkgs/development/libraries/portaudio/default.nix
+++ b/pkgs/development/libraries/portaudio/default.nix
@@ -15,6 +15,8 @@ stdenv.mkDerivation rec {
 
   configureFlags = [ "--disable-mac-universal --enable-cxx" ];
 
+  NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.cc.isClang "-Wno-error=nullability-inferred-on-nested-type -Wno-error=nullability-completeness-on-arrays";
+
   propagatedBuildInputs = stdenv.lib.optionals stdenv.isDarwin [ AudioUnit AudioToolbox CoreAudio CoreServices Carbon ];
 
   patchPhase = stdenv.lib.optionalString stdenv.isDarwin ''
diff --git a/pkgs/development/libraries/qscintilla/default.nix b/pkgs/development/libraries/qscintilla/default.nix
index 2c63f893a2c..43f0e431bb1 100644
--- a/pkgs/development/libraries/qscintilla/default.nix
+++ b/pkgs/development/libraries/qscintilla/default.nix
@@ -20,8 +20,10 @@ stdenv.mkDerivation rec {
     sha256 = "04678skipydx68zf52vznsfmll2v9aahr66g50lcqbr6xsmgr1yi";
   };
 
-  buildInputs = [ (if withQt5 then qtbase else qt4) ]
-    ++ lib.optional (withQt5 && stdenv.isDarwin) qtmacextras;
+  buildInputs = [ (if withQt5 then qtbase else qt4) ];
+
+  propagatedBuildInputs = lib.optional (withQt5 && stdenv.isDarwin) qtmacextras;
+
   nativeBuildInputs = [ unzip ]
     ++ (if withQt5 then [ qmake ] else [ qmake4Hook ])
     ++ lib.optional stdenv.isDarwin fixDarwinDylibNames;
diff --git a/pkgs/development/libraries/range-v3/default.nix b/pkgs/development/libraries/range-v3/default.nix
index 7fe4b504a99..256b756ed45 100644
--- a/pkgs/development/libraries/range-v3/default.nix
+++ b/pkgs/development/libraries/range-v3/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "range-v3-${version}";
-  version = "0.4.0";
+  version = "0.5.0";
 
   src = fetchFromGitHub {
     owner = "ericniebler";
     repo = "range-v3";
     rev = version;
-    sha256 = "1s5gj799aa94nfg3r24whq7ck69g0zypf70w14wx64pgwg0424vf";
+    sha256 = "0fzbpaa4vwlivi417zxm1d6v4lkp5c9f5bd706nn2fmw3zxjj815";
   };
 
   nativeBuildInputs = [ cmake ];
diff --git a/pkgs/development/libraries/tbb/default.nix b/pkgs/development/libraries/tbb/default.nix
index 615ac4fa690..f95ae385ab6 100644
--- a/pkgs/development/libraries/tbb/default.nix
+++ b/pkgs/development/libraries/tbb/default.nix
@@ -2,13 +2,13 @@
 
 with stdenv.lib; stdenv.mkDerivation rec {
   name = "tbb-${version}";
-  version = "2019_U5";
+  version = "2019_U6";
 
   src = fetchFromGitHub {
     owner = "01org";
     repo = "tbb";
     rev = version;
-    sha256 = "0390da1iya2mvn3ribjb1f8yvzsqsf5b16wn6dqbjxcz0crmwlzk";
+    sha256 = "1zbf06l659vq6s5wp3ln96ycwcd42caffan5vilqvqyxqvjljyic";
   };
 
   makeFlags = concatStringsSep " " (
diff --git a/pkgs/development/libraries/v8/build-standalone-static-library.patch b/pkgs/development/libraries/v8/build-standalone-static-library.patch
deleted file mode 100644
index 994c322429d..00000000000
--- a/pkgs/development/libraries/v8/build-standalone-static-library.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-diff --git a/build/standalone.gypi b/build/standalone.gypi
-index b6519c4..ef9e7c5 100644
---- a/build/standalone.gypi
-+++ b/build/standalone.gypi
-@@ -373,6 +373,9 @@
-       }],
-     ],
-     'target_conditions': [
-+      ['_type=="static_library"', {
-+        'standalone_static_library': 1,
-+      }],
-       ['v8_code == 0', {
-         'defines!': [
-           'DEBUG',
diff --git a/pkgs/development/libraries/v8/disable-building-tests.patch b/pkgs/development/libraries/v8/disable-building-tests.patch
deleted file mode 100644
index 1854a9b7e56..00000000000
--- a/pkgs/development/libraries/v8/disable-building-tests.patch
+++ /dev/null
@@ -1,27 +0,0 @@
-diff --git a/Makefile b/Makefile
-index 9761265..80169b2 100644
---- a/Makefile
-+++ b/Makefile
-@@ -248,8 +248,6 @@ NACL_ARCHES = nacl_ia32 nacl_x64
- GYPFILES = third_party/icu/icu.gypi third_party/icu/icu.gyp \
- 	   build/shim_headers.gypi build/features.gypi build/standalone.gypi \
- 	   build/toolchain.gypi build/all.gyp build/mac/asan.gyp \
--	   test/cctest/cctest.gyp \
--	   test/unittests/unittests.gyp tools/gyp/v8.gyp \
- 	   tools/parser-shell.gyp testing/gmock.gyp testing/gtest.gyp \
- 	   buildtools/third_party/libc++abi/libc++abi.gyp \
- 	   buildtools/third_party/libc++/libc++.gyp samples/samples.gyp \
-diff --git a/build/all.gyp b/build/all.gyp
-index 4aeb507..1ff2c7a 100644
---- a/build/all.gyp
-+++ b/build/all.gyp
-@@ -10,8 +10,6 @@
-       'dependencies': [
-         '../samples/samples.gyp:*',
-         '../src/d8.gyp:d8',
--        '../test/cctest/cctest.gyp:*',
--        '../test/unittests/unittests.gyp:*',
-       ],
-       'conditions': [
-         ['component!="shared_library"', {
-
diff --git a/pkgs/development/libraries/v8/fPIC-for-static.patch b/pkgs/development/libraries/v8/fPIC-for-static.patch
deleted file mode 100644
index 39564772af8..00000000000
--- a/pkgs/development/libraries/v8/fPIC-for-static.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/build/standalone.gypi b/build/standalone.gypi
-index 7670e5b..230518c 100644
---- a/build/standalone.gypi
-+++ b/build/standalone.gypi
-@@ -205,7 +205,7 @@
-           [ 'visibility=="hidden" and v8_enable_backtrace==0', {
-             'cflags': [ '-fvisibility=hidden' ],
-           }],
--          [ 'component=="shared_library"', {
-+          [ 'component=="shared_library" or component=="static_library" and (v8_target_arch=="x64" or v8_target_arch=="arm64")', {
-             'cflags': [ '-fPIC', ],
-           }],
-         ],