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author | Bruno Bzeznik <Bruno.Bzeznik@imag.fr> | 2019-06-13 14:35:13 +0200 |
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committer | Bruno Bzeznik <Bruno.Bzeznik@imag.fr> | 2019-06-13 14:35:13 +0200 |
commit | 9fbf8625f19003c2be1addbe0d9f5c4ecbda9a1d (patch) | |
tree | 0817ae67b8d47198707ff4c4b1a48d50241461ea /pkgs/applications | |
parent | 0e6f1831172d7f9bc9301a627419a5456c0abdf1 (diff) | |
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cd-hit: init at 4.8.1
Diffstat (limited to 'pkgs/applications')
-rw-r--r-- | pkgs/applications/science/biology/cd-hit/default.nix | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/cd-hit/default.nix b/pkgs/applications/science/biology/cd-hit/default.nix new file mode 100644 index 00000000000..1a41a28a19a --- /dev/null +++ b/pkgs/applications/science/biology/cd-hit/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchFromGitHub, makeWrapper, zlib, perl, perlPackages }: + +stdenv.mkDerivation rec { + version = "4.8.1"; + pname = "cd-hit"; + + src = fetchFromGitHub { + owner = "weizhongli"; + repo = "cdhit"; + rev = "V${version}"; + sha256 = "032nva6iiwmw59gjipm1mv0xlcckhxsf45mc2qbnv19lbis0q22i"; + }; + + propagatedBuildInputs = [ perl perlPackages.TextNSP perlPackages.PerlMagick perlPackages.Storable ]; + + nativeBuildInputs = [ zlib makeWrapper ]; + + makeFlags = [ "PREFIX=$(out)/bin" ]; + + preInstall = "mkdir -p $out/bin"; + + postFixup = '' + wrapProgram $out/bin/FET.pl --prefix PERL5LIB : $PERL5LIB + wrapProgram $out/bin/plot_2d.pl --prefix PERL5LIB : $PERL5LIB + wrapProgram $out/bin/clstr_list_sort.pl --prefix PERL5LIB : $PERL5LIB + ''; + meta = with stdenv.lib; { + description = "Clustering and comparing protein or nucleotide sequences"; + homepage = http://weizhongli-lab.org/cd-hit/; + license = licenses.gpl2; + maintainers = [ maintainers.bzizou ]; + platforms = platforms.unix; + }; +} |