Merge remote-tracking branch 'upstream/master' into staging-base

Conflicts:
	pkgs/build-support/cc-wrapper/default.nix
	pkgs/build-support/gcc-wrapper-old/builder.sh
	pkgs/build-support/trivial-builders.nix
	pkgs/desktops/kde-4.14/kde-package/default.nix
	pkgs/development/compilers/openjdk-darwin/8.nix
	pkgs/development/compilers/openjdk-darwin/default.nix
	pkgs/development/compilers/openjdk/7.nix
	pkgs/development/compilers/openjdk/8.nix
	pkgs/development/compilers/oraclejdk/jdk-linux-base.nix
	pkgs/development/compilers/zulu/default.nix
	pkgs/development/haskell-modules/generic-builder.nix
	pkgs/misc/misc.nix
	pkgs/stdenv/generic/builder.sh
	pkgs/stdenv/generic/setup.sh

13 files changed, 110 insertions, 124 deletions

diff --git a/pkgs/applications/audio/mpg123/default.nix b/pkgs/applications/audio/mpg123/default.nix
index 59012432caf..37717babce4 100644
--- a/pkgs/applications/audio/mpg123/default.nix
+++ b/pkgs/applications/audio/mpg123/default.nix
@@ -4,11 +4,11 @@
 }:
 
 stdenv.mkDerivation rec {
-  name = "mpg123-1.23.8";
+  name = "mpg123-1.25.4";
 
   src = fetchurl {
     url = "mirror://sourceforge/mpg123/${name}.tar.bz2";
-    sha256 = "13ngfzk84k4ks7ymanmq8f6707yrybra5h0mk3ir6mdnxk4068yy";
+    sha256 = "1rxknrnl3ji5hi5rbckpzhbl1k5r8i53kcys4xdgg0xbi8765dfd";
   };
 
   buildInputs = stdenv.lib.optional (!stdenv.isDarwin) alsaLib;
diff --git a/pkgs/applications/audio/spotify/default.nix b/pkgs/applications/audio/spotify/default.nix
index 266e221649e..ad0f7ee14c5 100644
--- a/pkgs/applications/audio/spotify/default.nix
+++ b/pkgs/applications/audio/spotify/default.nix
@@ -8,7 +8,8 @@ let
   # Please update the stable branch!
   # Latest version number can be found at:
   # http://repository-origin.spotify.com/pool/non-free/s/spotify-client/
-  version = "1.0.57.474.gca9c9538-30";
+  # Be careful not to pick the testing version.
+  version = "1.0.49.125.g72ee7853-111";
 
   deps = [
     alsaLib
@@ -53,7 +54,7 @@ stdenv.mkDerivation {
 
   src = fetchurl {
     url = "https://repository-origin.spotify.com/pool/non-free/s/spotify-client/spotify-client_${version}_amd64.deb";
-    sha256 = "fe46f2084c45c756bee366f744d2821d79e82866b19942e30bb2a20c1e597437";
+    sha256 = "0l008x06d257vcw6gq3q90hvv93cq6mxpj11by1np6bzzg61qv8x";
   };
 
   buildInputs = [ dpkg makeWrapper ];
diff --git a/pkgs/applications/misc/alacritty/default.nix b/pkgs/applications/misc/alacritty/default.nix
index 3dda61d95ae..a00e0ec8a48 100644
--- a/pkgs/applications/misc/alacritty/default.nix
+++ b/pkgs/applications/misc/alacritty/default.nix
@@ -17,16 +17,16 @@
 with rustPlatform;
 
 buildRustPackage rec {
-  name = "alacritty-unstable-2017-07-08";
+  name = "alacritty-unstable-2017-07-25";
 
   src = fetchFromGitHub {
     owner = "jwilm";
     repo = "alacritty";
-    rev = "94849c4f2a19bd49337f5cf090f94ac6a940c414";
-    sha256 = "0cawrq0787pcfifn5awccq29a1ag85wfbmx1ccz7m33prk3ry9jp";
+    rev = "49c73f6d55e5a681a0e0f836cd3e9fe6af30788f";
+    sha256 = "0h5hrb2g0fpc6xn94hmvxjj21cqbj4vgqkznvd64jl84qbyh1xjl";
   };
 
-  depsSha256 = "0lb83aan6lgdsdcrd6zdrxhz5bi96cw4ygqqlpm43w42chwzz0xj";
+  depsSha256 = "1pbb0swgpsbd6x3avxz6fv3q31dg801li47jibz721a4n9c0rssx";
 
   buildInputs = [
     cmake
diff --git a/pkgs/applications/misc/gnss-sdr/default.nix b/pkgs/applications/misc/gnss-sdr/default.nix
new file mode 100644
index 00000000000..68b49492791
--- /dev/null
+++ b/pkgs/applications/misc/gnss-sdr/default.nix
@@ -0,0 +1,67 @@
+{ stdenv, fetchFromGitHub
+, armadillo
+, boost
+, cmake
+, glog
+, gmock
+, openssl
+, google-gflags
+, gnuradio
+, orc
+, pkgconfig
+, pythonPackages
+, uhd
+}:
+
+stdenv.mkDerivation rec {
+  name = "gnss-sdr-${version}";
+  version = "0.0.9";
+
+  src = fetchFromGitHub {
+    owner = "gnss-sdr";
+    repo = "gnss-sdr";
+    rev = "v${version}";
+    sha256 = "0gis932ly3vk7d5qvznffp54pkmbw3m6v60mxjfdj5dd3r7vf975";
+  };
+
+  buildInputs = [
+    armadillo
+    boost.dev
+    cmake
+    glog
+    gmock
+    openssl.dev
+    google-gflags
+    gnuradio
+    orc
+    pkgconfig
+    pythonPackages.Mako
+
+    # UHD support is optional, but gnuradio is built with it, so there's
+    # nothing to be gained by leaving it out.
+    uhd
+  ];
+
+  enableParallelBuilding = true;
+
+  cmakeFlags = [
+    "-DGFlags_ROOT_DIR=${google-gflags}/lib"
+    "-DGLOG_INCLUDE_DIR=${glog}/include"
+
+    # gnss-sdr doesn't truly depend on BLAS or LAPACK, as long as
+    # armadillo is built using both, so skip checking for them.
+    "-DBLAS=YES"
+    "-DLAPACK=YES"
+
+    # Similarly, it doesn't actually use gfortran despite checking for
+    # its presence.
+    "-DGFORTRAN=YES"
+  ];
+
+  meta = with stdenv.lib; {
+    description = "An open source Global Navigation Satellite Systems software-defined receiver";
+    homepage = http://gnss-sdr.org/;
+    license = licenses.gpl3Plus;
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/applications/misc/gpsbabel/default.nix b/pkgs/applications/misc/gpsbabel/default.nix
index ace89cd8a21..0911fbace44 100644
--- a/pkgs/applications/misc/gpsbabel/default.nix
+++ b/pkgs/applications/misc/gpsbabel/default.nix
@@ -1,14 +1,14 @@
-{ lib, stdenv, fetchurl, fetchpatch, zlib, qt4, which, IOKit }:
+{ lib, stdenv, fetchFromGitHub, fetchpatch, zlib, which, IOKit, qtbase }:
 
 stdenv.mkDerivation rec {
   name = "gpsbabel-${version}";
-  version = "1.5.3";
+  version = "1.5.4";
 
-  src = fetchurl {
-    # gpgbabel.org makes it hard to get the source tarball automatically, so
-    # get it from elsewhere.
-    url = "mirror://debian/pool/main/g/gpsbabel/gpsbabel_${version}.orig.tar.gz";
-    sha256 = "0l6c8911f7i5bbdzah9irhqf127ib0b7lv53rb8r9z8g439mznq1";
+  src = fetchFromGitHub {
+    owner = "gpsbabel";
+    repo = "gpsbabel";
+    rev = "gpsbabel_${lib.replaceStrings ["."] ["_"] version}";
+    sha256 = "0v6wpp14zkfbarmksf9dn3wmpj1araxd7xi5xp7gpl7kafb9aiwi";
   };
 
   patches = [
@@ -19,7 +19,7 @@ stdenv.mkDerivation rec {
     })
   ];
 
-  buildInputs = [ zlib qt4 which ]
+  buildInputs = [ zlib qtbase which ]
     ++ lib.optionals stdenv.isDarwin [ IOKit ];
 
   /* FIXME: Building the documentation, with "make doc", requires this:
@@ -46,7 +46,9 @@ stdenv.mkDerivation rec {
     # The raymarine and gtm tests fail on i686 despite -ffloat-store.
   + lib.optionalString stdenv.isi686 "rm -v testo.d/raymarine.test testo.d/gtm.test;"
     # The gtm, kml and tomtom asc tests fail on darwin, see PR #23572.
-  + lib.optionalString stdenv.isDarwin "rm -v testo.d/gtm.test testo.d/kml.test testo.d/tomtom_asc.test";
+  + lib.optionalString stdenv.isDarwin "rm -v testo.d/gtm.test testo.d/kml.test testo.d/tomtom_asc.test testo.d/classic-2.test"
+    # The arc-project test fails on aarch64.
+  + lib.optionalString stdenv.isAarch64 "rm -v testo.d/arc-project.test";
 
   meta = with stdenv.lib; {
     description = "Convert, upload and download data from GPS and Map programs";
diff --git a/pkgs/applications/networking/cluster/docker-machine/default.nix b/pkgs/applications/networking/cluster/docker-machine/default.nix
index b2d70b1f767..5016dc8fca3 100644
--- a/pkgs/applications/networking/cluster/docker-machine/default.nix
+++ b/pkgs/applications/networking/cluster/docker-machine/default.nix
@@ -3,7 +3,7 @@
 
 buildGoPackage rec {
   name = "machine-${version}";
-  version = "0.10.0";
+  version = "0.12.0";
 
   goPackagePath = "github.com/docker/machine";
 
@@ -11,7 +11,7 @@ buildGoPackage rec {
     rev = "v${version}";
     owner = "docker";
     repo = "machine";
-    sha256 = "1ik0jbp8zqzmg8w1fnf82gdlwrvw4nl40lmins7h8y0q6psrp6gc";
+    sha256 = "08y87d0whag9sy1q5s84xrz95k12c9crh3zmdcr1ylrwqnszrn2y";
   };
 
   postInstall = ''
diff --git a/pkgs/applications/networking/mumble/default.nix b/pkgs/applications/networking/mumble/default.nix
index 696681dce27..1b87008bac7 100644
--- a/pkgs/applications/networking/mumble/default.nix
+++ b/pkgs/applications/networking/mumble/default.nix
@@ -119,14 +119,14 @@ let
   };
 
   gitSource = rec {
-    version = "2017-04-16";
+    version = "2017-05-25";
     qtVersion = 5;
 
     # Needs submodules
     src = fetchgit {
       url = "https://github.com/mumble-voip/mumble";
-      rev = "eb63d0b14a7bc19bfdf34f80921798f0a67cdedf";
-      sha256 = "1nirbx0fnvi1nl6s5hrm4b0v7s2i22yshkmqnfjhxyr0y272s7lh";
+      rev = "3754898ac94ed3f1e86408114917d1b4c06f17b3";
+      sha256 = "1qh49x3y7m0c0h0gcs6amkf8nb75p6g611zwn19mbplwmi7h9y8f";
     };
   };
 in {
diff --git a/pkgs/applications/science/logic/cryptominisat/default.nix b/pkgs/applications/science/logic/cryptominisat/default.nix
index 26efbc5fe72..4d96339149a 100644
--- a/pkgs/applications/science/logic/cryptominisat/default.nix
+++ b/pkgs/applications/science/logic/cryptominisat/default.nix
@@ -1,18 +1,17 @@
-{ stdenv, fetchFromGitHub, fetchpatch, cmake, python, vim }:
+{ stdenv, fetchFromGitHub, fetchpatch, cmake, python, xxd }:
 
 stdenv.mkDerivation rec {
   name = "cryptominisat-${version}";
   version = "5.0.1";
 
   src = fetchFromGitHub {
-    owner = "msoos";
-    repo = "cryptominisat";
-    rev = version;
+    owner  = "msoos";
+    repo   = "cryptominisat";
+    rev    = version;
     sha256 = "0cpw5d9vplxvv3aaplhnga55gz1hy29p7s4pkw1306knkbhlzvkb";
   };
 
-  # vim for xxd binary
-  buildInputs = [ python vim ];
+  buildInputs = [ python xxd ];
   nativeBuildInputs = [ cmake ];
 
   patches = [(fetchpatch rec {
@@ -23,9 +22,9 @@ stdenv.mkDerivation rec {
 
   meta = with stdenv.lib; {
     description = "An advanced SAT Solver";
+    homepage    = https://github.com/msoos/cryptominisat;
+    license     = licenses.mit;
     maintainers = with maintainers; [ mic92 ];
-    platforms = platforms.unix;
-    license = licenses.mit;
-    homepage = https://github.com/msoos/cryptominisat;
+    platforms   = platforms.unix;
   };
 }
diff --git a/pkgs/applications/version-management/gitkraken/default.nix b/pkgs/applications/version-management/gitkraken/default.nix
index 23a3ab7fa5e..c7f7a4b02e4 100644
--- a/pkgs/applications/version-management/gitkraken/default.nix
+++ b/pkgs/applications/version-management/gitkraken/default.nix
@@ -9,11 +9,11 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   name = "gitkraken-${version}";
-  version = "2.6.0";
+  version = "2.7.0";
 
   src = fetchurl {
     url = "https://release.gitkraken.com/linux/v${version}.deb";
-    sha256 = "1msdwqp20pwaxv1a6maqb7wmaq00m8jpdga7fmbjcnpvkcdz49l7";
+    sha256 = "0088vdn47563f0v9zhk1vggn3c2cfg8rhmifc6nw4zbss49si5gp";
   };
 
   libPath = makeLibraryPath [
diff --git a/pkgs/applications/virtualization/virtualbox/default.nix b/pkgs/applications/virtualization/virtualbox/default.nix
index 6675068bda9..a67663d56df 100644
--- a/pkgs/applications/virtualization/virtualbox/default.nix
+++ b/pkgs/applications/virtualization/virtualbox/default.nix
@@ -18,10 +18,10 @@ with stdenv.lib;
 let
   python = python2;
   buildType = "release";
-  extpack = "244e6f450cba64e0b025711050db3c43e6ce77e12cd80bcd08796315a90c8aaf";
-  extpackRev = "115126";
-  main = "fcc918000b8c5ece553541ec10a9182410a742b7266257c76dda895dcd389899";
-  version = "5.1.22";
+  extpack = "1952ikz4xsjgdd0pzdx1riwaingyhkxp0ind31yzqc4d0hp8l6b5";
+  extpackRev = "117012";
+  main = "0q5vjsih4ndn1b0s9l1ppxng6dljld5bin5nqfrhvgr2ldlv2bgf";
+  version = "5.1.24";
 
   # See https://github.com/NixOS/nixpkgs/issues/672 for details
   extensionPack = requireFile rec {
@@ -88,7 +88,7 @@ in stdenv.mkDerivation {
   '';
 
   patches = optional enableHardening ./hardened.patch
-    ++ [ ./qtx11extras.patch ./linux-4.12.patch ];
+    ++ [ ./qtx11extras.patch ];
 
   postPatch = ''
     sed -i -e 's|/sbin/ifconfig|${nettools}/bin/ifconfig|' \
diff --git a/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix b/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix
index 8865022c23e..e19cb748607 100644
--- a/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix
+++ b/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix
@@ -19,7 +19,7 @@ stdenv.mkDerivation {
 
   src = fetchurl {
     url = "http://download.virtualbox.org/virtualbox/${version}/VBoxGuestAdditions_${version}.iso";
-    sha256 = "54df14f234b6aa484b94939ab0f435b5dd859417612b65a399ecc34a62060380";
+    sha256 = "0hxxv2707fb6x34m5cmjhj73sxwgmy2dgir7mbbdh9wivw07b9q1";
   };
 
   KERN_DIR = "${kernel.dev}/lib/modules/*/build";
@@ -62,9 +62,6 @@ stdenv.mkDerivation {
     for i in *
     do
         cd $i
-        # Files within the guest additions ISO are using DOS line endings
-        sed -re '/^(@@|---|\+\+\+)/!s/$/\r/' ${../linux-4.12.patch} \
-          | patch -d vboxguest -p4
         find . -type f | xargs sed 's/depmod -a/true/' -i
         make
         cd ..
diff --git a/pkgs/applications/virtualization/virtualbox/linux-4.12.patch b/pkgs/applications/virtualization/virtualbox/linux-4.12.patch
deleted file mode 100644
index 7157365466f..00000000000
--- a/pkgs/applications/virtualization/virtualbox/linux-4.12.patch
+++ /dev/null
@@ -1,80 +0,0 @@
-commit 47fee9325e3b5feed0dbc4ba9e2de77c6d55e3bb
-Author: vboxsync <vboxsync@cfe28804-0f27-0410-a406-dd0f0b0b656f>
-Date:   Wed May 17 09:42:23 2017 +0000
-
-    Runtime/r0drv: Linux 4.12 5-level page table adaptions
-    
-    
-    git-svn-id: https://www.virtualbox.org/svn/vbox/trunk@66927 cfe28804-0f27-0410-a406-dd0f0b0b656f
-
-diff --git a/src/VBox/Runtime/r0drv/linux/memobj-r0drv-linux.c b/src/VBox/Runtime/r0drv/linux/memobj-r0drv-linux.c
-index 28dc33f963..41ed058860 100644
---- a/src/VBox/Runtime/r0drv/linux/memobj-r0drv-linux.c
-+++ b/src/VBox/Runtime/r0drv/linux/memobj-r0drv-linux.c
-@@ -902,6 +902,9 @@ static struct page *rtR0MemObjLinuxVirtToPage(void *pv)
-     union
-     {
-         pgd_t       Global;
-+#if LINUX_VERSION_CODE >= KERNEL_VERSION(4, 12, 0)
-+        p4d_t       Four;
-+#endif
- #if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 11)
-         pud_t       Upper;
- #endif
-@@ -917,12 +920,26 @@ static struct page *rtR0MemObjLinuxVirtToPage(void *pv)
-     u.Global = *pgd_offset(current->active_mm, ulAddr);
-     if (RT_UNLIKELY(pgd_none(u.Global)))
-         return NULL;
--
--#if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 11)
-+#if LINUX_VERSION_CODE >= KERNEL_VERSION(4, 12, 0)
-+    u.Four  = *p4d_offset(&u.Global, ulAddr);
-+    if (RT_UNLIKELY(p4d_none(u.Four)))
-+        return NULL;
-+    if (p4d_large(u.Four))
-+    {
-+        pPage = p4d_page(u.Four);
-+        AssertReturn(pPage, NULL);
-+        pfn   = page_to_pfn(pPage);      /* doing the safe way... */
-+        AssertCompile(P4D_SHIFT - PAGE_SHIFT < 31);
-+        pfn  += (ulAddr >> PAGE_SHIFT) & ((UINT32_C(1) << (P4D_SHIFT - PAGE_SHIFT)) - 1);
-+        return pfn_to_page(pfn);
-+    }
-+    u.Upper = *pud_offset(&u.Four, ulAddr);
-+#elif LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 11)
-     u.Upper = *pud_offset(&u.Global, ulAddr);
-+#endif
-     if (RT_UNLIKELY(pud_none(u.Upper)))
-         return NULL;
--# if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 25)
-+#if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 25)
-     if (pud_large(u.Upper))
-     {
-         pPage = pud_page(u.Upper);
-@@ -931,8 +948,8 @@ static struct page *rtR0MemObjLinuxVirtToPage(void *pv)
-         pfn += (ulAddr >> PAGE_SHIFT) & ((UINT32_C(1) << (PUD_SHIFT - PAGE_SHIFT)) - 1);
-         return pfn_to_page(pfn);
-     }
--# endif
--
-+#endif
-+#if LINUX_VERSION_CODE >= KERNEL_VERSION(2, 6, 11)
-     u.Middle = *pmd_offset(&u.Upper, ulAddr);
- #else  /* < 2.6.11 */
-     u.Middle = *pmd_offset(&u.Global, ulAddr);
-diff --git a/src/VBox/Runtime/r0drv/linux/the-linux-kernel.h b/src/VBox/Runtime/r0drv/linux/the-linux-kernel.h
-index 5afdee9e71..20aab0817f 100644
---- a/src/VBox/Runtime/r0drv/linux/the-linux-kernel.h
-+++ b/src/VBox/Runtime/r0drv/linux/the-linux-kernel.h
-@@ -159,6 +159,11 @@
- # include <asm/tlbflush.h>
- #endif
- 
-+/* for set_pages_x() */
-+#if LINUX_VERSION_CODE >= KERNEL_VERSION(4, 12, 0)
-+# include <asm/set_memory.h>
-+#endif
-+
- #if LINUX_VERSION_CODE >= KERNEL_VERSION(3, 7, 0)
- # include <asm/smap.h>
- #else
diff --git a/pkgs/applications/window-managers/jwm/default.nix b/pkgs/applications/window-managers/jwm/default.nix
index 40050a69025..85136cb9f97 100644
--- a/pkgs/applications/window-managers/jwm/default.nix
+++ b/pkgs/applications/window-managers/jwm/default.nix
@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   name = "jwm-${version}";
-  version = "1594";
+  version = "1600";
   
   src = fetchFromGitHub {
     owner = "joewing";
     repo = "jwm";
     rev = "s${version}";
-    sha256 = "1608ws3867xipcbdl2gw6ybcxzk14vq24sr62m9l65m4g4m3wbd2";
+    sha256 = "0rfb67r6g873alvcbn9531415qlfmvfrdfm4xrsyhdgdwj7dv5kv";
   };
 
   nativeBuildInputs = [ pkgconfig automake autoconf libtool gettext which ];