Merge branch 'master' into package-petsc-p4est

30 files changed, 470 insertions, 196 deletions

diff --git a/pkgs/applications/audio/mousai/default.nix b/pkgs/applications/audio/mousai/default.nix
index 2f45a3fea92..9044d201c45 100644
--- a/pkgs/applications/audio/mousai/default.nix
+++ b/pkgs/applications/audio/mousai/default.nix
@@ -1,7 +1,6 @@
 { lib
 , python3
 , fetchFromGitHub
-, fetchpatch
 , appstream-glib
 , desktop-file-utils
 , gettext
@@ -19,7 +18,7 @@
 
 python3.pkgs.buildPythonApplication rec {
   pname = "mousai";
-  version = "0.4.1";
+  version = "0.4.2";
 
   format = "other";
 
@@ -27,17 +26,9 @@ python3.pkgs.buildPythonApplication rec {
     owner = "SeaDve";
     repo = "Mousai";
     rev = "v${version}";
-    sha256 = "sha256-AfR5n1dIm9X5OoPiikQEhHBFQq0rmQH4h7cCJ2yXoXI=";
+    sha256 = "sha256-zH++GGFIz3oxkKOYB4zhY6yL3vENEXxtrv8mZZ+41kU=";
   };
 
-  patches = [
-    (fetchpatch {
-      name = "fix-ABI-breakage-from-libadwaita.patch";
-      url = "https://github.com/SeaDve/Mousai/commit/e3db2d9d1949300f49399209b56d667746e539df.patch";
-      sha256 = "078kvmyhw4jd1m2npai0yl00lwh47jys2n03pkgxp6jf873y83vs";
-    })
-  ];
-
   postPatch = ''
     patchShebangs build-aux/meson
   '';
diff --git a/pkgs/applications/audio/plexamp/default.nix b/pkgs/applications/audio/plexamp/default.nix
index a7289cc35c8..9921c1b7e88 100644
--- a/pkgs/applications/audio/plexamp/default.nix
+++ b/pkgs/applications/audio/plexamp/default.nix
@@ -2,13 +2,13 @@
 
 let
   pname = "plexamp";
-  version = "3.4.7";
+  version = "3.5.0";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "https://plexamp.plex.tv/plexamp.plex.tv/desktop/Plexamp-${version}.AppImage";
     name="${pname}-${version}.AppImage";
-    sha512 = "+jmx4X9KiK1Tv2Cjb/445MY9G2b7pLdKxFtBFMaQwRhqTItA33MfHqKBwmytmbEhxhy0LDTU2woJvEMPQCmnvg==";
+    sha512 = "NjhrtGQsIbNDmGPEDmEbaHSfvUTFb1e7yPorF/BzWTfwVoFZEJiNzP/1k+zTJ4Yfd4mG0W0GYx0jh8m/micWIg==";
   };
 
   appimageContents = appimageTools.extractType2 {
@@ -34,7 +34,7 @@ in appimageTools.wrapType2 {
   meta = with lib; {
     description = "A beautiful Plex music player for audiophiles, curators, and hipsters";
     homepage = "https://plexamp.com/";
-    changelog = "https://forums.plex.tv/t/plexamp-release-notes/221280/29";
+    changelog = "https://forums.plex.tv/t/plexamp-release-notes/221280/30";
     license = licenses.unfree;
     maintainers = with maintainers; [ killercup synthetica ];
     platforms = [ "x86_64-linux" ];
diff --git a/pkgs/applications/audio/shortwave/default.nix b/pkgs/applications/audio/shortwave/default.nix
index 36ee6c12eef..0f4ffa14228 100644
--- a/pkgs/applications/audio/shortwave/default.nix
+++ b/pkgs/applications/audio/shortwave/default.nix
@@ -8,8 +8,8 @@
 , gitMinimal
 , glib
 , gst_all_1
-, gtk3
-, libhandy_0
+, gtk4
+, libadwaita
 , meson
 , ninja
 , openssl
@@ -22,20 +22,20 @@
 
 stdenv.mkDerivation rec {
   pname = "shortwave";
-  version = "1.1.1";
+  version = "2.0.1";
 
   src = fetchFromGitLab {
     domain = "gitlab.gnome.org";
     owner = "World";
     repo = "Shortwave";
     rev = version;
-    sha256 = "1vlhp2ss06j41simjrrjg38alp85jddhqyvccy6bhfzm0gzynwld";
+    sha256 = "sha256-25qPb7qlqCwYJzl4qZxAZYx5asxSlXBlc/0dGyBdk1o=";
   };
 
   cargoDeps = rustPlatform.fetchCargoTarball {
     inherit src;
     name = "${pname}-${version}";
-    hash = "sha256-0+KEbjTLecL0u/3S9FWf2r2h9ZrgcRTY163kS3NKJqA=";
+    hash = "sha256-00dQXcSNmdZb2nSLG3q7jm4sugF9XR4LbH0OmcuHVxA=";
   };
 
   nativeBuildInputs = [
@@ -57,8 +57,8 @@ stdenv.mkDerivation rec {
     dbus
     gdk-pixbuf
     glib
-    gtk3
-    libhandy_0
+    gtk4
+    libadwaita
     openssl
     sqlite
   ] ++ (with gst_all_1; [
diff --git a/pkgs/applications/audio/tonelib-jam/default.nix b/pkgs/applications/audio/tonelib-jam/default.nix
new file mode 100644
index 00000000000..c58023d6a4b
--- /dev/null
+++ b/pkgs/applications/audio/tonelib-jam/default.nix
@@ -0,0 +1,60 @@
+{ stdenv
+, dpkg
+, lib
+, autoPatchelfHook
+, fetchurl
+, gtk3
+, glib
+, desktop-file-utils
+, alsa-lib
+, libjack2
+, harfbuzz
+, fribidi
+, pango
+, freetype
+}:
+
+stdenv.mkDerivation rec {
+  pname = "tonelib-jam";
+  version = "4.6.6";
+
+  src = fetchurl {
+    url = "https://www.tonelib.net/download/0509/ToneLib-Jam-amd64.deb";
+    sha256 = "sha256-cizIQgO35CQSLme/LKQqP+WzB/jCTk+fS5Z+EtF7wnQ=";
+  };
+
+  buildInputs = [
+    dpkg
+    gtk3
+    glib
+    desktop-file-utils
+    alsa-lib
+    libjack2
+    harfbuzz
+    fribidi
+    pango
+    freetype
+  ];
+
+  nativeBuildInputs = [
+    autoPatchelfHook
+  ];
+
+  unpackPhase = ''
+    mkdir -p $TMP/ $out/
+    dpkg -x $src $TMP
+  '';
+
+  installPhase = ''
+    cp -R $TMP/usr/* $out/
+    mv $out/bin/ToneLib-Jam $out/bin/tonelib-jam
+  '';
+
+  meta = with lib; {
+    description = "ToneLib Jam – the learning and practice software for guitar players";
+    homepage = "https://tonelib.net/";
+    license = licenses.unfree;
+    maintainers = with maintainers; [ dan4ik605743 ];
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/applications/audio/tonelib-zoom/default.nix b/pkgs/applications/audio/tonelib-zoom/default.nix
new file mode 100644
index 00000000000..94ef3037a7c
--- /dev/null
+++ b/pkgs/applications/audio/tonelib-zoom/default.nix
@@ -0,0 +1,48 @@
+{ stdenv
+, dpkg
+, lib
+, autoPatchelfHook
+, fetchurl
+, webkitgtk
+, libjack2
+, alsa-lib
+}:
+
+stdenv.mkDerivation rec {
+  pname = "tonelib-zoom";
+  version = "4.3.1";
+
+  src = fetchurl {
+    url = "https://www.tonelib.net/download/0129/ToneLib-Zoom-amd64.deb";
+    sha256 = "sha256-4q2vM0/q7o/FracnO2xxnr27opqfVQoN7fsqTD9Tr/c=";
+  };
+
+  buildInputs = [
+    dpkg
+    webkitgtk
+    libjack2
+    alsa-lib
+  ];
+
+  nativeBuildInputs = [
+    autoPatchelfHook
+  ];
+
+  unpackPhase = ''
+    mkdir -p $TMP/ $out/
+    dpkg -x $src $TMP
+  '';
+
+  installPhase = ''
+    cp -R $TMP/usr/* $out/
+    mv $out/bin/ToneLib-Zoom $out/bin/tonelib-zoom
+  '';
+
+  meta = with lib; {
+    description = "ToneLib Zoom – change and save all the settings in your Zoom(r) guitar pedal";
+    homepage = "https://tonelib.net/";
+    license = licenses.unfree;
+    maintainers = with maintainers; [ dan4ik605743 ];
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/applications/editors/quartus-prime/default.nix b/pkgs/applications/editors/quartus-prime/default.nix
index 96a543f3cb5..773b1f278e0 100644
--- a/pkgs/applications/editors/quartus-prime/default.nix
+++ b/pkgs/applications/editors/quartus-prime/default.nix
@@ -1,99 +1,9 @@
-{ buildFHSUserEnv, makeDesktopItem, writeScript, stdenv, lib, requireFile, unstick,
-  supportedDevices ? [ "Arria II" "Cyclone V" "Cyclone IV" "Cyclone 10 LP" "MAX II/V" "MAX 10 FPGA" ] }:
+{ stdenv, lib, buildFHSUserEnv, callPackage, makeDesktopItem, writeScript
+, supportedDevices ? [ "Arria II" "Cyclone V" "Cyclone IV" "Cyclone 10 LP" "MAX II/V" "MAX 10 FPGA" ]
+, unwrapped ? callPackage ./quartus.nix { inherit supportedDevices; }
+}:
 
 let
-  deviceIds = {
-    "Arria II" = "arria_lite";
-    "Cyclone V" = "cyclonev";
-    "Cyclone IV" = "cyclone";
-    "Cyclone 10 LP" = "cyclone10lp";
-    "MAX II/V" = "max";
-    "MAX 10 FPGA" = "max10";
-  };
-
-  supportedDeviceIds =
-    assert lib.assertMsg (lib.all (name: lib.hasAttr name deviceIds) supportedDevices)
-      "Supported devices are: ${lib.concatStringsSep ", " (lib.attrNames deviceIds)}";
-    lib.listToAttrs (map (name: {
-      inherit name;
-      value = deviceIds.${name};
-    }) supportedDevices);
-
-  unsupportedDeviceIds = lib.filterAttrs (name: value:
-    !(lib.hasAttr name supportedDeviceIds)
-  ) deviceIds;
-
-  quartus = stdenv.mkDerivation rec {
-    version = "20.1.0.711";
-    pname = "quartus-prime-lite-unwrapped";
-
-    src = let
-      require = {name, sha256}: requireFile {
-        inherit name sha256;
-        url = "${meta.homepage}/${lib.versions.majorMinor version}/?edition=lite&platform=linux";
-      };
-
-      hashes = {
-        "arria_lite" = "09g2knq23h3vj0s5y7hsdnqbbkr3pnv53dzpqcw2lq9mb5zfs9r0";
-        "cyclonev" = "05hrpysasyfb7xhxg68spdffxyvxcx0iagibd5jz643b7n6aalpa";
-        "cyclone" = "1x3rnwsvzrb5kwdz35sbcabxmcvj8xxpnjlpcjwfc69ybiyr6sgz";
-        "cyclone10lp" = "1x6d4hm697mjgzaxixrw5va8anr6ihhx96x2524r6axpwqf6wcja";
-        "max" = "060b7v0xh86kkjyiix7akfkzhx2kl1b3q117kp7xibnz6yrzwmy3";
-        "max10" = "05840l9pmqa4i1b3ajfaxkqz1hppls556vbq16a42acz2qs2g578";
-      };
-
-      devicePackages = map (id: {
-        name = "${id}-${version}.qdz";
-        sha256 = lib.getAttr id hashes;
-      }) (lib.attrValues supportedDeviceIds);
-    in map require ([{
-      name = "QuartusLiteSetup-${version}-linux.run";
-      sha256 = "07ssrv8p8kacal6xd80n4h7l5xz13aw1m1gfqqaxig0ivsj971z5";
-    } {
-      name = "ModelSimSetup-${version}-linux.run";
-      sha256 = "0smxasrmr1c8k6hy378knskpjmz4cgpgb35v5jclns0kx68y3c42";
-    }] ++ devicePackages);
-
-    nativeBuildInputs = [ unstick ];
-
-    buildCommand = let
-      installers = lib.sublist 0 2 src;
-      components = lib.sublist 2 ((lib.length src) - 2) src;
-      copyInstaller = installer: ''
-        # `$(cat $NIX_CC/nix-support/dynamic-linker) $src[0]` often segfaults, so cp + patchelf
-        cp ${installer} $TEMP/${installer.name}
-        chmod u+w,+x $TEMP/${installer.name}
-        patchelf --interpreter $(cat $NIX_CC/nix-support/dynamic-linker) $TEMP/${installer.name}
-      '';
-      copyComponent = component: "cp ${component} $TEMP/${component.name}";
-      # leaves enabled: quartus, modelsim_ase, devinfo
-      disabledComponents = [
-        "quartus_help"
-        "quartus_update"
-        # not modelsim_ase
-        "modelsim_ae"
-      ] ++ (lib.attrValues unsupportedDeviceIds);
-    in ''
-      ${lib.concatMapStringsSep "\n" copyInstaller installers}
-      ${lib.concatMapStringsSep "\n" copyComponent components}
-
-      unstick $TEMP/${(builtins.head installers).name} \
-        --disable-components ${lib.concatStringsSep "," disabledComponents} \
-        --mode unattended --installdir $out --accept_eula 1
-
-      rm -r $out/uninstall $out/logs
-    '';
-
-    meta = {
-      homepage = "https://fpgasoftware.intel.com";
-      description = "FPGA design and simulation software";
-      license = lib.licenses.unfree;
-      platforms = lib.platforms.linux;
-      hydraPlatforms = [ ]; # requireFile srcs cannot be fetched by hydra, ignore
-      maintainers = with lib.maintainers; [ kwohlfahrt ];
-    };
-  };
-
   desktopItem = makeDesktopItem {
     name = "quartus-prime-lite";
     exec = "quartus";
@@ -102,7 +12,6 @@ let
     genericName = "Quartus Prime";
     categories = "Development;";
   };
-
 # I think modelsim_ase/linux/vlm checksums itself, so use FHSUserEnv instead of `patchelf`
 in buildFHSUserEnv rec {
   name = "quartus-prime-lite"; # wrapped
@@ -136,9 +45,7 @@ in buildFHSUserEnv rec {
     xorg.libXrender
   ];
 
-  passthru = {
-    unwrapped = quartus;
-  };
+  passthru = { inherit unwrapped; };
 
   extraInstallCommands = let
     quartusExecutables = (map (c: "quartus/bin/quartus_${c}") [
@@ -156,14 +63,14 @@ in buildFHSUserEnv rec {
   in ''
     mkdir -p $out/share/applications $out/share/icons/128x128
     ln -s ${desktopItem}/share/applications/* $out/share/applications
-    ln -s ${quartus}/licenses/images/dc_quartus_panel_logo.png $out/share/icons/128x128/quartus.png
+    ln -s ${unwrapped}/licenses/images/dc_quartus_panel_logo.png $out/share/icons/128x128/quartus.png
 
     mkdir -p $out/quartus/bin $out/quartus/sopc_builder/bin $out/modelsim_ase/bin
     WRAPPER=$out/bin/${name}
     EXECUTABLES="${lib.concatStringsSep " " (quartusExecutables ++ qsysExecutables ++ modelsimExecutables)}"
     for executable in $EXECUTABLES; do
         echo "#!${stdenv.shell}" >> $out/$executable
-        echo "$WRAPPER ${quartus}/$executable \$@" >> $out/$executable
+        echo "$WRAPPER ${unwrapped}/$executable \$@" >> $out/$executable
     done
 
     cd $out
diff --git a/pkgs/applications/editors/quartus-prime/quartus.nix b/pkgs/applications/editors/quartus-prime/quartus.nix
new file mode 100644
index 00000000000..9475f441703
--- /dev/null
+++ b/pkgs/applications/editors/quartus-prime/quartus.nix
@@ -0,0 +1,97 @@
+{ stdenv, lib, unstick, requireFile
+, supportedDevices ? [ "Arria II" "Cyclone V" "Cyclone IV" "Cyclone 10 LP" "MAX II/V" "MAX 10 FPGA" ]
+}:
+
+let
+  deviceIds = {
+    "Arria II" = "arria_lite";
+    "Cyclone V" = "cyclonev";
+    "Cyclone IV" = "cyclone";
+    "Cyclone 10 LP" = "cyclone10lp";
+    "MAX II/V" = "max";
+    "MAX 10 FPGA" = "max10";
+  };
+
+  supportedDeviceIds =
+    assert lib.assertMsg (lib.all (name: lib.hasAttr name deviceIds) supportedDevices)
+      "Supported devices are: ${lib.concatStringsSep ", " (lib.attrNames deviceIds)}";
+    lib.listToAttrs (map (name: {
+      inherit name;
+      value = deviceIds.${name};
+    }) supportedDevices);
+
+  unsupportedDeviceIds = lib.filterAttrs (name: value:
+    !(lib.hasAttr name supportedDeviceIds)
+  ) deviceIds;
+
+  componentHashes = {
+    "arria_lite" = "140jqnb97vrxx6398cpgpw35zrrx3z5kv1x5gr9is1xdbnf4fqhy";
+    "cyclone" = "116kf69ryqcmlc2k8ra0v32jy7nrk7w4s5z3yll7h3c3r68xcsfr";
+    "cyclone10lp" = "07wpgx9bap6rlr5bcmr9lpsxi3cy4yar4n3pxfghazclzqfi2cyl";
+    "cyclonev" = "11baa9zpmmfkmyv33w1r57ipf490gnd3dpi2daripf38wld8lgak";
+    "max" = "1zy2d42dqmn97fwmv4x6pmihh4m23jypv3nd830m1mj7jkjx9kcq";
+    "max10" = "1hvi9cpcjgbih3l6nh8x1vsp0lky5ax85jb2yqmzla80n7dl9ahs";
+  };
+
+  version = "20.1.1.720";
+  homepage = "https://fpgasoftware.intel.com";
+
+  require = {name, sha256}: requireFile {
+    inherit name sha256;
+    url = "${homepage}/${lib.versions.majorMinor version}/?edition=lite&platform=linux";
+  };
+
+in stdenv.mkDerivation rec {
+  inherit version;
+  pname = "quartus-prime-lite-unwrapped";
+
+  src = map require ([{
+    name = "QuartusLiteSetup-${version}-linux.run";
+    sha256 = "0mjp1rg312dipr7q95pb4nf4b8fwvxgflnd1vafi3g9cshbb1c3k";
+  } {
+    name = "ModelSimSetup-${version}-linux.run";
+    sha256 = "1cqgv8x6vqga8s4v19yhmgrr886rb6p7sbx80528df5n4rpr2k4i";
+  }] ++ (map (id: {
+    name = "${id}-${version}.qdz";
+    sha256 = lib.getAttr id componentHashes;
+  }) (lib.attrValues supportedDeviceIds)));
+
+  nativeBuildInputs = [ unstick ];
+
+  buildCommand = let
+    installers = lib.sublist 0 2 src;
+    components = lib.sublist 2 ((lib.length src) - 2) src;
+    copyInstaller = installer: ''
+        # `$(cat $NIX_CC/nix-support/dynamic-linker) $src[0]` often segfaults, so cp + patchelf
+        cp ${installer} $TEMP/${installer.name}
+        chmod u+w,+x $TEMP/${installer.name}
+        patchelf --interpreter $(cat $NIX_CC/nix-support/dynamic-linker) $TEMP/${installer.name}
+      '';
+    copyComponent = component: "cp ${component} $TEMP/${component.name}";
+    # leaves enabled: quartus, modelsim_ase, devinfo
+    disabledComponents = [
+      "quartus_help"
+      "quartus_update"
+      # not modelsim_ase
+      "modelsim_ae"
+    ] ++ (lib.attrValues unsupportedDeviceIds);
+  in ''
+      ${lib.concatMapStringsSep "\n" copyInstaller installers}
+      ${lib.concatMapStringsSep "\n" copyComponent components}
+
+      unstick $TEMP/${(builtins.head installers).name} \
+        --disable-components ${lib.concatStringsSep "," disabledComponents} \
+        --mode unattended --installdir $out --accept_eula 1
+
+      rm -r $out/uninstall $out/logs
+    '';
+
+  meta = with lib; {
+    inherit homepage;
+    description = "FPGA design and simulation software";
+    license = licenses.unfree;
+    platforms = platforms.linux;
+    hydraPlatforms = [ ]; # requireFile srcs cannot be fetched by hydra, ignore
+    maintainers = with maintainers; [ kwohlfahrt ];
+  };
+}
diff --git a/pkgs/applications/graphics/ImageMagick/6.x.nix b/pkgs/applications/graphics/ImageMagick/6.x.nix
index 5fea254ce08..4ac4af48aab 100644
--- a/pkgs/applications/graphics/ImageMagick/6.x.nix
+++ b/pkgs/applications/graphics/ImageMagick/6.x.nix
@@ -1,6 +1,6 @@
 { lib, stdenv, fetchFromGitHub, pkg-config, libtool
 , bzip2, zlib, libX11, libXext, libXt, fontconfig, freetype, ghostscript, libjpeg, djvulibre
-, lcms2, openexr, libpng, librsvg, libtiff, libxml2, openjpeg, libwebp, fftw, libheif, libde265
+, lcms2, openexr, libpng, liblqr1, librsvg, libtiff, libxml2, openjpeg, libwebp, fftw, libheif, libde265
 , ApplicationServices, Foundation
 }:
 
@@ -34,6 +34,7 @@ stdenv.mkDerivation rec {
     [ "--with-frozenpaths" ]
     ++ (if arch != null then [ "--with-gcc-arch=${arch}" ] else [ "--without-gcc-arch" ])
     ++ lib.optional (librsvg != null) "--with-rsvg"
+    ++ lib.optional (liblqr1 != null) "--with-lqr"
     ++ lib.optionals (ghostscript != null)
       [ "--with-gs-font-dir=${ghostscript}/share/ghostscript/fonts"
         "--with-gslib"
@@ -46,7 +47,7 @@ stdenv.mkDerivation rec {
 
   buildInputs =
     [ zlib fontconfig freetype ghostscript
-      libpng libtiff libxml2 libheif libde265 djvulibre
+      liblqr1 libpng libtiff libxml2 libheif libde265 djvulibre
     ]
     ++ lib.optionals (!stdenv.hostPlatform.isMinGW)
       [ openexr librsvg openjpeg ]
diff --git a/pkgs/applications/graphics/ImageMagick/7.0.nix b/pkgs/applications/graphics/ImageMagick/7.0.nix
index e2fdb19127d..0fd76235f52 100644
--- a/pkgs/applications/graphics/ImageMagick/7.0.nix
+++ b/pkgs/applications/graphics/ImageMagick/7.0.nix
@@ -1,6 +1,6 @@
 { lib, stdenv, fetchFromGitHub, pkg-config, libtool
 , bzip2, zlib, libX11, libXext, libXt, fontconfig, freetype, ghostscript, libjpeg, djvulibre
-, lcms2, openexr, libpng, librsvg, libtiff, libxml2, openjpeg, libwebp, libheif
+, lcms2, openexr, libpng, liblqr1, librsvg, libtiff, libxml2, openjpeg, libwebp, libheif
 , ApplicationServices
 , Foundation
 , testVersion, imagemagick
@@ -18,13 +18,13 @@ in
 
 stdenv.mkDerivation rec {
   pname = "imagemagick";
-  version = "7.1.0-0";
+  version = "7.1.0-2";
 
   src = fetchFromGitHub {
     owner = "ImageMagick";
     repo = "ImageMagick";
     rev = version;
-    sha256 = "sha256-TmyJMzj5tHMrVm6xRguZmXIg7c6mHmqusMMdJAHNqNg=";
+    sha256 = "sha256-0nTz9UBspROrNj72amyZmFYK/y9Xg4+qNt4raZiK3AI=";
   };
 
   outputs = [ "out" "dev" "doc" ]; # bin/ isn't really big
@@ -36,6 +36,7 @@ stdenv.mkDerivation rec {
     [ "--with-frozenpaths" ]
     ++ (if arch != null then [ "--with-gcc-arch=${arch}" ] else [ "--without-gcc-arch" ])
     ++ lib.optional (librsvg != null) "--with-rsvg"
+    ++ lib.optional (liblqr1 != null) "--with-lqr"
     ++ lib.optionals (ghostscript != null)
       [ "--with-gs-font-dir=${ghostscript}/share/ghostscript/fonts"
         "--with-gslib"
@@ -48,7 +49,7 @@ stdenv.mkDerivation rec {
 
   buildInputs =
     [ zlib fontconfig freetype ghostscript
-      libpng libtiff libxml2 libheif djvulibre
+      liblqr1 libpng libtiff libxml2 libheif djvulibre
     ]
     ++ lib.optionals (!stdenv.hostPlatform.isMinGW)
       [ openexr librsvg openjpeg ]
@@ -84,7 +85,7 @@ stdenv.mkDerivation rec {
     homepage = "http://www.imagemagick.org/";
     description = "A software suite to create, edit, compose, or convert bitmap images";
     platforms = platforms.linux ++ platforms.darwin;
-    maintainers = with maintainers; [ erictapen ];
+    maintainers = with maintainers; [ erictapen dotlambda ];
     license = licenses.asl20;
     mainProgram = "magick";
   };
diff --git a/pkgs/applications/misc/kanjidraw/default.nix b/pkgs/applications/misc/kanjidraw/default.nix
new file mode 100644
index 00000000000..53c752651d2
--- /dev/null
+++ b/pkgs/applications/misc/kanjidraw/default.nix
@@ -0,0 +1,47 @@
+{ lib
+, fetchFromGitHub
+, python3
+, bash
+}:
+
+python3.pkgs.buildPythonApplication rec {
+  pname = "kanjidraw";
+  version = "0.2.3";
+
+  src = fetchFromGitHub {
+    owner = "obfusk";
+    repo = "kanjidraw";
+    rev = "v${version}";
+    sha256 = "03ag8vkbf85qww857ii8hcnn8bh5qa7rsmhka0v9vfxk272ifbyq";
+  };
+
+  propagatedBuildInputs = with python3.pkgs; [ tkinter ];
+
+  postPatch = ''
+    substituteInPlace Makefile --replace /bin/bash ${bash}/bin/bash
+  '';
+
+  checkPhase = ''
+    make test
+  '';
+
+  meta = with lib; {
+    description = "Handwritten kanji recognition";
+    longDescription = ''
+      kanjidraw is a simple Python library + GUI for matching (the strokes of a)
+      handwritten kanji against its database.
+
+      You can use the GUI to draw and subsequently select a kanji from the list of
+      probable matches, which will then be copied to the clipboard.
+
+      The database is based on KanjiVG and the algorithms are based on the
+      Kanji draw Android app.
+    '';
+    homepage = "https://github.com/obfusk/kanjidraw";
+    license = with licenses; [
+      agpl3Plus     # code
+      cc-by-sa-30   # data.json
+    ];
+    maintainers = [ maintainers.obfusk ];
+  };
+}
diff --git a/pkgs/applications/misc/kile-wl/default.nix b/pkgs/applications/misc/kile-wl/default.nix
index a9e44964d45..9146f38df36 100644
--- a/pkgs/applications/misc/kile-wl/default.nix
+++ b/pkgs/applications/misc/kile-wl/default.nix
@@ -2,20 +2,20 @@
 
 rustPlatform.buildRustPackage rec {
   pname = "kile-wl";
-  version = "unstable-2021-06-01";
+  version = "unstable-2021-06-24";
 
   src = fetchFromGitLab {
     owner = "snakedye";
     repo = "kile";
-    rev = "28235f85ece148e7010c5d6ac088688100a18e04";
-    sha256 = "sha256-UTfYYywOwa728zLkLWQaz6wN0TM/4OzbHQGedjdHGSI=";
+    rev = "6a306b0b5af0f250135eb88e0e72a5038fccd6a8";
+    sha256 = "sha256-DznIDzI5rNrlKJdXjpOpsLL8IO6tuIvW0pNdRN8N6Go=";
   };
 
   passthru.updateScript = unstableGitUpdater {
     url = "https://gitlab.com/snakedye/kile.git";
   };
 
-  cargoSha256 = "sha256-dzOkiZYHQu5AuwkbWEtIJAyZ1TNIGYkfz+S3q6K384w=";
+  cargoSha256 = "sha256-LFRqhgvziQ7a8OWRzXqNIfziP6bRHTe2oF55N09rFy8=";
 
   nativeBuildInputs = [ scdoc ];
 
diff --git a/pkgs/applications/misc/kiln/default.nix b/pkgs/applications/misc/kiln/default.nix
new file mode 100644
index 00000000000..dfa114f446a
--- /dev/null
+++ b/pkgs/applications/misc/kiln/default.nix
@@ -0,0 +1,30 @@
+{ lib, buildGoModule, fetchFromSourcehut, scdoc }:
+
+buildGoModule rec {
+  pname = "kiln";
+  version = "0.2.1";
+
+  src = fetchFromSourcehut {
+    owner = "~adnano";
+    repo = pname;
+    rev = version;
+    hash = "sha256-c6ed62Nn++qw+U/DCiYeGwF77YsBxexWKZ7UQ3LE4fI=";
+  };
+
+  nativeBuildInputs = [ scdoc ];
+
+  vendorSha256 = "sha256-bMpzebwbVHAbBtw0uuGyWd4wnM9z6tlsEQN4S/iucgk=";
+
+  installPhase = ''
+    runHook preInstall
+    make PREFIX=$out install
+    runHook postInstall
+  '';
+
+  meta = with lib; {
+    description = "A simple static site generator for Gemini";
+    homepage = "https://git.sr.ht/~adnano/kiln";
+    license = licenses.mit;
+    maintainers = with maintainers; [ sikmir ];
+  };
+}
diff --git a/pkgs/applications/misc/kjv/default.nix b/pkgs/applications/misc/kjv/default.nix
index 5247207d149..08a1b5a71af 100644
--- a/pkgs/applications/misc/kjv/default.nix
+++ b/pkgs/applications/misc/kjv/default.nix
@@ -1,43 +1,41 @@
-{ lib, stdenv, fetchFromGitHub, fetchpatch }:
+{ lib, stdenv, fetchFromGitHub, fetchpatch, readline }:
 
 let
+  patchPrefix = "https://github.com/samuelgrf/kjv/commit/";
 
-patch-base = "https://github.com/LukeSmithxyz/kjv/commit/";
-
-add-apocrypha = fetchpatch {
-  url = patch-base + "b92b7622285d10464f9274f11e740bef90705bbc.patch";
-  sha256 = "0n4sj8p9m10fcair4msc129jxkkx5whqzhjbr5k4lfgp6nb1zk8k";
-};
-
-add-install-target = fetchpatch {
-  url = patch-base + "f4ad73539eb73f1890f4b791d8d38dd95900a4a4.patch";
-  sha256 = "1yzj72i5fkzn2i4wl09q6jx7nwn2h4jwm49fc23nxfwchzar9m1q";
-};
+  add-apocrypha = fetchpatch {
+    url = patchPrefix + "0856fa0d37b45de0d6b47d163b5ea9a0b7f2c061.patch";
+    sha256 = "1jkajdg4wvpbbwc5mn37i4c8nfis4z0pv5rl7gqs0laj0gpj7jn8";
+  };
 
+  add-install-target = fetchpatch {
+    url = patchPrefix + "50a83256ee45430fb06b7aea1945dd91c6813bc3.patch";
+    sha256 = "0bv9yma67jdj496a6vn6y007c9gwjpg3rzld1i9m9y9xmlzq4yzv";
+  };
 in
 
-stdenv.mkDerivation rec {
+stdenv.mkDerivation {
   pname = "kjv";
-  version = "unstable-2018-12-25";
+  version = "unstable-2021-03-11";
 
   src = fetchFromGitHub {
     owner = "bontibon";
-    repo = pname;
-    rev = "fda81a610e4be0e7c5cf242de655868762dda1d4";
-    sha256 = "1favfcjvd3pzz1ywwv3pbbxdg7v37s8vplgsz8ag016xqf5ykqqf";
+    repo = "kjv";
+    rev = "108595dcbb9bb12d40e0309f029b6fb3ccd81309";
+    hash = "sha256-Z6myd9Xn23pYizG+IZVDrP988pYU06QIcpqXtWTcPiw=";
   };
 
   patches = [ add-apocrypha add-install-target ];
 
-  makeFlags = [
-    "PREFIX=${placeholder "out"}"
-  ];
+  buildInputs = [ readline ];
+
+  makeFlags = [ "PREFIX=${placeholder "out"}" ];
 
   meta = with lib; {
     description = "The Bible, King James Version";
     homepage = "https://github.com/bontibon/kjv";
-    license = licenses.publicDomain;
-    maintainers = [ maintainers.jtobin ];
+    license = licenses.unlicense;
+    maintainers = with maintainers; [ jtobin samuelgrf ];
+    mainProgram = "kjv";
   };
 }
-
diff --git a/pkgs/applications/misc/lutris/default.nix b/pkgs/applications/misc/lutris/default.nix
index d294271ca25..2d70daa94ec 100644
--- a/pkgs/applications/misc/lutris/default.nix
+++ b/pkgs/applications/misc/lutris/default.nix
@@ -1,6 +1,8 @@
-{ buildPythonApplication, lib, fetchFromGitHub
+{ buildPythonApplication
+, lib
+, fetchFromGitHub
 
-# build inputs
+  # build inputs
 , atk
 , gdk-pixbuf
 , glib-networking
@@ -13,7 +15,7 @@
 , webkitgtk
 , wrapGAppsHook
 
-# python dependencies
+  # python dependencies
 , dbus-python
 , distro
 , evdev
@@ -25,7 +27,7 @@
 , keyring
 , python_magic
 
-# commands that lutris needs
+  # commands that lutris needs
 , xrandr
 , pciutils
 , psmisc
@@ -71,15 +73,16 @@ let
     gstreamer
   ];
 
-in buildPythonApplication rec {
+in
+buildPythonApplication rec {
   pname = "lutris-original";
-  version = "0.5.8.3";
+  version = "0.5.8.4";
 
   src = fetchFromGitHub {
     owner = "lutris";
     repo = "lutris";
     rev = "v${version}";
-    sha256 = "sha256-NnWIP9oEndk/hDo5Z33pkmZ61pxT/ScmZ4YpS2ajK/8=";
+    sha256 = "sha256-5ivXIgDyM9PRvuUhPFPgziXDvggcL+p65kI2yOaiS1M=";
   };
 
   nativeBuildInputs = [ wrapGAppsHook ];
diff --git a/pkgs/applications/misc/makeself/default.nix b/pkgs/applications/misc/makeself/default.nix
index e60e110087f..353fe661483 100644
--- a/pkgs/applications/misc/makeself/default.nix
+++ b/pkgs/applications/misc/makeself/default.nix
@@ -12,7 +12,8 @@ stdenv.mkDerivation rec {
     sha256 = "07cq7q71bv3fwddkp2863ylry2ivds00f8sjy8npjpdbkailxm21";
   };
 
-  patchPhase = "patchShebangs test";
+  patches = [ ./tests-use-better-shell.patch ];
+  postPatch = "patchShebangs test";
 
   doCheck = true;
   checkTarget = "test";
@@ -31,7 +32,7 @@ stdenv.mkDerivation rec {
   '';
 
   meta = with lib; {
-    homepage = "http://megastep.org/makeself";
+    homepage = "https://makeself.io";
     description = "Utility to create self-extracting packages";
     license = licenses.gpl2;
     maintainers = [ maintainers.wmertens ];
diff --git a/pkgs/applications/misc/makeself/tests-use-better-shell.patch b/pkgs/applications/misc/makeself/tests-use-better-shell.patch
new file mode 100644
index 00000000000..159a93622ad
--- /dev/null
+++ b/pkgs/applications/misc/makeself/tests-use-better-shell.patch
@@ -0,0 +1,10 @@
+Use full bash's sh in tests instead of /bin/sh, as that would be
+too minimalist in the build sandbox.  See issue:
+https://github.com/NixOS/nixpkgs/issues/110149#issuecomment-874258128
+diff --git a/test/extracttest b/test/extracttest
+--- a/test/extracttest
++++ b/test/extracttest
+@@ -9,2 +9,3 @@ setupTests() {
+   $SUT $* archive makeself-test.run "Test $*" echo Testing
++  sed "1s|/bin|$(dirname "$SHELL")|" -i ./makeself-test.run
+ }
diff --git a/pkgs/applications/misc/sfm/default.nix b/pkgs/applications/misc/sfm/default.nix
index 4f17fa87950..1d9dc3811aa 100644
--- a/pkgs/applications/misc/sfm/default.nix
+++ b/pkgs/applications/misc/sfm/default.nix
@@ -1,4 +1,4 @@
-{ lib, stdenv, fetchFromGitHub, conf ? null }:
+{ lib, stdenv, fetchFromGitHub, writeText, conf ? null }:
 
 stdenv.mkDerivation rec {
   pname = "sfm";
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
     hash = "sha256-DwXKrSqcebNI5N9REXyMV16W2kr72IH9+sKSVehc5zw=";
   };
 
-  configFile = lib.optionalString (conf!=null) (lib.writeText "config.def.h" conf);
+  configFile = lib.optionalString (conf!=null) (writeText "config.def.h" conf);
 
   postPatch = lib.optionalString (conf!=null) "cp ${configFile} config.def.h";
 
diff --git a/pkgs/applications/networking/cluster/fn-cli/default.nix b/pkgs/applications/networking/cluster/fn-cli/default.nix
index 8620c43cdbe..95e16797cf4 100644
--- a/pkgs/applications/networking/cluster/fn-cli/default.nix
+++ b/pkgs/applications/networking/cluster/fn-cli/default.nix
@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "fn";
-  version = "0.6.7";
+  version = "0.6.8";
 
   src = fetchFromGitHub {
     owner = "fnproject";
     repo = "cli";
     rev = version;
-    sha256 = "sha256-50tPR+x3U4XJB6lthEiZjOy2pD8LprSE41ZpH2Px8JY=";
+    sha256 = "sha256-8b1VyukVMTXLAnvYcjXgTdPtMq3YxJgTpxe25Kj+Wpw=";
   };
 
   vendorSha256 = null;
diff --git a/pkgs/applications/networking/cluster/linkerd/default.nix b/pkgs/applications/networking/cluster/linkerd/default.nix
index 31fae0e31c2..7b5e5810581 100644
--- a/pkgs/applications/networking/cluster/linkerd/default.nix
+++ b/pkgs/applications/networking/cluster/linkerd/default.nix
@@ -64,8 +64,8 @@ in
     };
     edge = generic {
       channel = "edge";
-      version = "21.6.3";
-      sha256 = "sha256-NgfbkeVRl0AGNkZSS2nSAHp4eZ49QNSEYMuFe1G5iBY=";
-      vendorSha256 = "sha256-rq/MHo5MG2EKZ3d937TIDXFCoWnLlQO3C/fo1bhRxCA=";
+      version = "21.7.1";
+      sha256 = "sha256-VLq776A0H2IZLBeYjXpYzFixcydw/OcYsvKFxeLuewo=";
+      vendorSha256 = "sha256-xSOPMFHfyCmG+yTzBfKR7F5KYV0gcKRNM0UrxpGBpE4=";
     };
   }
diff --git a/pkgs/applications/networking/cluster/nerdctl/default.nix b/pkgs/applications/networking/cluster/nerdctl/default.nix
index 7be59ee1661..418f3259178 100644
--- a/pkgs/applications/networking/cluster/nerdctl/default.nix
+++ b/pkgs/applications/networking/cluster/nerdctl/default.nix
@@ -10,23 +10,21 @@
 
 buildGoModule rec {
   pname = "nerdctl";
-  version = "0.8.3";
+  version = "0.10.0";
 
   src = fetchFromGitHub {
     owner = "containerd";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-mBoqyDfGho2e4RuFwkiU2R+zb38LzByWtH4pOhguueY=";
+    sha256 = "sha256-cqIIpdkQ6DF7DKXvwCoJBQKG0+lL8iP/Vx0q7rL8prg=";
   };
 
-  vendorSha256 = "sha256-S3Gp7HkBIZNZ8rkp64XaUQUj1TggGwI9FMrVkyLCQWA=";
+  vendorSha256 = "sha256-0+k1e7Sn+NYGAJDVUbUm0oedc1t2blezUhsjDIuIKvA=";
 
   nativeBuildInputs = [ makeWrapper installShellFiles ];
 
-  preBuild = let t = "github.com/containerd/nerdctl/pkg/version"; in
-    ''
-      buildFlagsArray+=("-ldflags" "-s -w -X ${t}.Version=v${version} -X ${t}.Revision=<unknown>")
-    '';
+  ldflags = let t = "github.com/containerd/nerdctl/pkg/version"; in
+    [ "-s" "-w" "-X ${t}.Version=v${version}" "-X ${t}.Revision=<unknown>" ];
 
   # Many checks require a containerd socket and running nerdctl after it's built
   doCheck = false;
diff --git a/pkgs/applications/networking/cluster/tanka/default.nix b/pkgs/applications/networking/cluster/tanka/default.nix
index c792a38001a..bf11b35d71a 100644
--- a/pkgs/applications/networking/cluster/tanka/default.nix
+++ b/pkgs/applications/networking/cluster/tanka/default.nix
@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "tanka";
-  version = "0.16.0";
+  version = "0.17.0";
 
   src = fetchFromGitHub {
     owner = "grafana";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-KvQIVJZD/VvLE5RocWLRVGbb8faLY2cBeFSE/6E7x50=";
+    sha256 = "sha256-9UfSKMyapmDyikRqs7UiA4YYcvj/Tin9pRqC9iFLPWE=";
   };
 
   vendorSha256 = "sha256-vpm2y/CxRNWkz6+AOMmmZH5AjRQWAa6WD5Fnx5lqJYw=";
diff --git a/pkgs/applications/networking/cluster/terragrunt/default.nix b/pkgs/applications/networking/cluster/terragrunt/default.nix
index faf817d1c7f..1717d320900 100644
--- a/pkgs/applications/networking/cluster/terragrunt/default.nix
+++ b/pkgs/applications/networking/cluster/terragrunt/default.nix
@@ -2,16 +2,16 @@
 
 buildGoModule rec {
   pname = "terragrunt";
-  version = "0.30.7";
+  version = "0.31.0";
 
   src = fetchFromGitHub {
     owner = "gruntwork-io";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-zcb2bdIvUeHEto2NeY0Zwj7jIB+ipVXpnb7q97IkvmA=";
+    sha256 = "sha256-JRIwPOExPbwLS7ps4pJpvIRaZ9jZZjVK+POaUHAmiPI=";
   };
 
-  vendorSha256 = "sha256-OgNNq1qRhCufcWemLxh50pzs432RxZpWWcyBB7xeiOs=";
+  vendorSha256 = "sha256-lck4nabDhFA8N0lo+cIKiJjlg2TGx3qMExbblHQwbvQ=";
 
   doCheck = false;
 
diff --git a/pkgs/applications/networking/cluster/waypoint/default.nix b/pkgs/applications/networking/cluster/waypoint/default.nix
index 3675aba028c..b0d0d6193e2 100644
--- a/pkgs/applications/networking/cluster/waypoint/default.nix
+++ b/pkgs/applications/networking/cluster/waypoint/default.nix
@@ -2,17 +2,17 @@
 
 buildGoModule rec {
   pname = "waypoint";
-  version = "0.4.0";
+  version = "0.4.1";
 
   src = fetchFromGitHub {
     owner = "hashicorp";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-yeD7XtcB/2ph6cCnOcv0yFQqvAMPDLXMrUWWkgmBUaA=";
+    sha256 = "sha256-JB/0nU/05Agh4fWFeSfrUHFtR8cQjxdXW0QHAoH0dDc=";
   };
 
   deleteVendor = true;
-  vendorSha256 = "sha256-xZGYPh3Yp3g22GraYfMESVpp7j5fOZASUEvN4YaDd1g=";
+  vendorSha256 = "sha256-2YrCRdpRk+gPHN8flahgWb2sbK5dYL5ivVqeJSsiy8Y=";
 
   nativeBuildInputs = [ go-bindata installShellFiles ];
 
diff --git a/pkgs/applications/networking/irc/weechat/scripts/buffer_autoset/default.nix b/pkgs/applications/networking/irc/weechat/scripts/buffer_autoset/default.nix
new file mode 100644
index 00000000000..a2e9fc3265a
--- /dev/null
+++ b/pkgs/applications/networking/irc/weechat/scripts/buffer_autoset/default.nix
@@ -0,0 +1,26 @@
+{ lib, stdenv, fetchurl, weechat }:
+
+stdenv.mkDerivation {
+  pname = "buffer_autoset";
+  version = "1.2";
+
+  src = fetchurl {
+    url = "https://raw.githubusercontent.com/weechat/scripts/2b308b44df39ba6563d02b2bcd40c384ec2777dc/python/buffer_autoset.py";
+    sha256 = "0csl3sfpijdbq1j6wabx347lvn91a24a2jfx5b5pspfxz7gixli1";
+  };
+
+  dontUnpack = true;
+
+  passthru.scripts = [ "buffer_autoset.py" ];
+
+  installPhase = ''
+    install -D $src $out/share/buffer_autoset.py
+  '';
+
+  meta = with lib; {
+    inherit (weechat.meta) platforms;
+    description = "buffer_autoset.py is a weechat script which auto-set buffer properties when a buffer is opened.";
+    license = licenses.gpl3Plus;
+    maintainers = with maintainers; [ govanify ];
+  };
+}
diff --git a/pkgs/applications/networking/irc/weechat/scripts/default.nix b/pkgs/applications/networking/irc/weechat/scripts/default.nix
index 1a975d2229d..ea665160f60 100644
--- a/pkgs/applications/networking/irc/weechat/scripts/default.nix
+++ b/pkgs/applications/networking/irc/weechat/scripts/default.nix
@@ -22,4 +22,6 @@
   weechat-otr = callPackage ./weechat-otr { };
 
   weechat-go = callPackage ./weechat-go { };
+
+  buffer_autoset = callPackage ./buffer_autoset { };
 }
diff --git a/pkgs/applications/networking/juju/default.nix b/pkgs/applications/networking/juju/default.nix
new file mode 100644
index 00000000000..b4de49730fe
--- /dev/null
+++ b/pkgs/applications/networking/juju/default.nix
@@ -0,0 +1,25 @@
+{ lib, fetchFromGitHub, buildGoModule }:
+
+buildGoModule rec {
+  pname = "juju";
+  version = "2.8.7";
+
+  src = fetchFromGitHub {
+    owner = "juju";
+    repo = "juju";
+    rev = "juju-${version}";
+    sha256 = "sha256-ZiG+LMeQboFxaLIBSHjRNe5tt8bEguYXQp3nhkoMpek=";
+  };
+
+  vendorSha256 = "sha256-5R3TmwOzHgdEQhS4B4Bb0InghaEhUVxDSl7oZl3aNZ4=";
+
+  # Disable tests because it attempts to use a mongodb instance
+  doCheck = false;
+
+  meta = with lib; {
+    description = "Open source modelling tool for operating software in the cloud";
+    homepage = "https://juju.is";
+    license = licenses.mit;
+    maintainers = with maintainers; [ citadelcore ];
+  };
+}
diff --git a/pkgs/applications/science/chemistry/jmol/default.nix b/pkgs/applications/science/chemistry/jmol/default.nix
index 92606f3f909..5d2158843ed 100644
--- a/pkgs/applications/science/chemistry/jmol/default.nix
+++ b/pkgs/applications/science/chemistry/jmol/default.nix
@@ -17,14 +17,14 @@ let
   };
 in
 stdenv.mkDerivation rec {
-  version = "14.31.42";
+  version = "14.31.44";
   pname = "jmol";
 
   src = let
     baseVersion = "${lib.versions.major version}.${lib.versions.minor version}";
   in fetchurl {
     url = "mirror://sourceforge/jmol/Jmol/Version%20${baseVersion}/Jmol%20${version}/Jmol-${version}-binary.tar.gz";
-    sha256 = "sha256-q81dUSxrKT3nzX0bFclolsyguQxXKlsiX9GCwEvOpAw=";
+    sha256 = "sha256-MHfqoQzUEL7nje7Y/hbaA8iktxfN7464TJXum5B6OCc=";
   };
 
   patchPhase = ''
diff --git a/pkgs/applications/science/math/glsurf/default.nix b/pkgs/applications/science/math/glsurf/default.nix
index 208bb95f930..58b2a617bd6 100644
--- a/pkgs/applications/science/math/glsurf/default.nix
+++ b/pkgs/applications/science/math/glsurf/default.nix
@@ -1,7 +1,12 @@
-{ lib, stdenv, fetchurl, ocamlPackages, libGLU, libGL, freeglut, giflib
-, libmysqlclient, mpfr, gmp, libtiff, libjpeg, libpng
+{ lib, stdenv, fetchurl, ocamlPackages, makeWrapper
+, libGLU, libGL, freeglut, mpfr, gmp
+, pkgsHostTarget
 }:
 
+let
+  inherit (pkgsHostTarget.targetPackages.stdenv) cc;
+in
+
 stdenv.mkDerivation {
   name = "glsurf-3.3.1";
 
@@ -10,17 +15,32 @@ stdenv.mkDerivation {
     sha256 = "0w8xxfnw2snflz8wdr2ca9f5g91w5vbyp1hwlx1v7vg83d4bwqs7";
   };
 
-  buildInputs = [ freeglut libGLU libGL libmysqlclient mpfr giflib gmp
-    libtiff libjpeg libpng ]
-  ++ (with ocamlPackages; [
-    ocaml findlib ocaml_mysql lablgl camlimages_4_1_2 mlgmpidl
+  nativeBuildInputs = [
+    makeWrapper
+  ] ++ (with ocamlPackages; [
+    ocaml findlib
+  ]);
+
+  buildInputs = [
+    freeglut libGL libGLU mpfr gmp
+  ] ++ (with ocamlPackages; [
+    camlp4 lablgl camlimages_4_2_4
   ]);
 
+  postPatch = ''
+    for f in callbacks*/Makefile src/Makefile; do
+      substituteInPlace "$f" --replace "+camlp4" \
+        "${ocamlPackages.camlp4}/lib/ocaml/${ocamlPackages.ocaml.version}/site-lib/camlp4"
+    done
+  '';
+
   installPhase = ''
     mkdir -p $out/bin $out/share/doc/glsurf
     cp ./src/glsurf.opt $out/bin/glsurf
     cp ./doc/doc.pdf $out/share/doc/glsurf
     cp -r ./examples $out/share/doc/glsurf
+
+    wrapProgram "$out/bin/glsurf" --set CC "${cc}/bin/${cc.targetPrefix}cc"
   '';
 
   meta = {
diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix
index 1ed174ebd46..218ab920a87 100644
--- a/pkgs/applications/science/math/sage/sage-src.nix
+++ b/pkgs/applications/science/math/sage/sage-src.nix
@@ -126,6 +126,15 @@ stdenv.mkDerivation rec {
       rev = "bc84af8c795b7da433d2000afc3626ee65ba28b8";
       sha256 = "sha256-5Kvs9jarC8xRIU1rdmvIWxQLC25ehiTLJpg5skh8WNM=";
     })
+
+    # eclib 20210625 update
+    # https://trac.sagemath.org/ticket/31443
+    (fetchSageDiff {
+      base = "9.4.beta3";
+      name = "eclib-20210625.patch";
+      rev = "789550ca04c94acfb1e803251538996a34962038";
+      sha256 = "sha256-VlyEn5hg3joG8t/GwiRfq9TzJ54AoHxLolsNQ3shc2c=";
+    })
   ];
 
   patches = nixPatches ++ bugfixPatches ++ packageUpgradePatches;
diff --git a/pkgs/applications/version-management/git-and-tools/bit/default.nix b/pkgs/applications/version-management/git-and-tools/bit/default.nix
index cce37df357b..c3524417829 100644
--- a/pkgs/applications/version-management/git-and-tools/bit/default.nix
+++ b/pkgs/applications/version-management/git-and-tools/bit/default.nix
@@ -6,13 +6,13 @@
 
 buildGoModule rec {
   pname = "bit";
-  version = "1.1.1";
+  version = "1.1.2";
 
   src = fetchFromGitHub {
     owner = "chriswalz";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-85GEx9y8r9Fjgfcwh1Bi8WDqBm6KF7uidutlF77my60=";
+    sha256 = "sha256-18R0JGbG5QBDghF4SyhXaKe9UY5UzF7Ap0Y061Z1SZ8=";
   };
 
   vendorSha256 = "sha256-3Y/B14xX5jaoL44rq9+Nn4niGViLPPXBa8WcJgTvYTA=";