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| author | Jason Daniel Augustine Gilliland <jdagilliland@gmail.com> | 2016-12-17 00:36:53 -0500 |
|---|---|---|
| committer | zimbatm <zimbatm@zimbatm.com> | 2016-12-22 14:10:37 +0000 |
| commit | 59ca5d213f99d10f9cc187763876b5c4008bac7d (patch) | |
| tree | de014a8a7f819a97f663c924c6ee56a212c86262 /pkgs/applications/science | |
| parent | af2ecc27fccc7f1e3ed3081f79f2894dde6b8f30 (diff) | |
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freebayes: init at 1.1.0
Signed-off-by: zimbatm <zimbatm@zimbatm.com>
Diffstat (limited to 'pkgs/applications/science')
| -rw-r--r-- | pkgs/applications/science/biology/freebayes/builder.sh | 11 | ||||
| -rw-r--r-- | pkgs/applications/science/biology/freebayes/default.nix | 27 |
2 files changed, 38 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/freebayes/builder.sh b/pkgs/applications/science/biology/freebayes/builder.sh new file mode 100644 index 00000000000..a9f56e77d7e --- /dev/null +++ b/pkgs/applications/science/biology/freebayes/builder.sh @@ -0,0 +1,11 @@ +source $stdenv/setup + +unpackPhase + +cd freebayes-* + +make + +mkdir -p $out/bin +cp bin/freebayes bin/bamleftalign $out/bin +cp scripts/* $out/bin diff --git a/pkgs/applications/science/biology/freebayes/default.nix b/pkgs/applications/science/biology/freebayes/default.nix new file mode 100644 index 00000000000..ef0da619b25 --- /dev/null +++ b/pkgs/applications/science/biology/freebayes/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchFromGitHub, cmake, gcc, zlib}: + +stdenv.mkDerivation rec { + name = "freebayes-${version}"; + version = "1.1.0"; + + src = fetchFromGitHub { + name = "freebayes-${version}-src"; + owner = "ekg"; + repo = "freebayes"; + rev = "refs/tags/v${version}"; + sha256 = "0xb8aicb36w9mfs1gq1x7mcp3p82kl7i61d162hfncqzg2npg8rr"; + fetchSubmodules = true; + }; + + buildInputs = [ cmake gcc zlib ]; + + builder = ./builder.sh; + + meta = with stdenv.lib; { + description = "Bayesian haplotype-based polymorphism discovery and genotyping"; + license = licenses.mit; + homepage = https://github.com/ekg/freebayes; + maintainers = with maintainers; [ jdagilliland ]; + platforms = [ "x86_64-linux" ]; + }; +} |